FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0547500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Citrate transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0484) R2 : 0.00979
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.216 (0.102) R2dN8 : 0.0126 R2N8 : 0.00979
σ : 0.911
deviance : 380.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.36 0.884 3.02 1.26 0.0454 -0.0319 1.3 4.67 -0.0609 17.5 31.2 4519 -- --
357.5 0.881 3.1 0.633 0.00414 0.392 1.51 -- -0.0353 17.1 32.8 4674 -- --
358.44 0.882 3.01 1.29 0.0587 -0.0624 -- 4.81 -0.0549 17.6 31.05 4608 -- --
359.64 0.883 3.11 0.53 0.0345 0.522 -- -- -0.0298 18.3 31.1 4598 -- --
358.55 0.882 3.02 1.23 -- -0.0151 -- 4.44 -0.0571 -- 31.06 4608 -- --
366.05 0.897 3.12 0.644 0.0312 -- 1.25 -- -0.15 17.7 -- -- -- --
369.13 0.9 3.12 0.634 0.115 -- -- -- -0.146 22.3 -- -- -- --
359.63 0.883 3.1 0.505 -- 0.506 -- -- -0.0511 -- 31.19 4598 -- --
365.75 0.891 3.12 -- 0.0765 0.593 -- -- -0.101 21.4 31.1 4495 -- --
369.94 0.899 3.12 0.636 -- -- -- -- -0.146 -- -- -- -- --
379.72 0.912 3.14 -- 0.119 -- -- -- -0.217 22.7 -- -- -- --
366.08 0.891 3.11 -- -- 0.589 -- -- -0.0911 -- 31.2 4598 -- --
380.61 0.911 3.14 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 343.64 temperature 10.0 270 > th dose dependent rect. 23 9
2 343.82 radiation 1.0 90 < th dose independent rect. 6 13
3 344.05 radiation 1.0 90 < th dose dependent rect. 7 10
5 344.30 precipitation 0.1 30 > th dose independent rect. 7 11
9 344.30 precipitation 0.1 30 > th dose dependent rect. 7 11
13 344.42 radiation 1.0 90 < th dose independent rect. 6 11
17 344.98 atmosphere 1005.0 270 > th dose independent rect. 14 3
18 345.07 atmosphere 995.0 270 > th dose dependent rect. 14 2
22 345.76 atmosphere 1015.0 90 < th dose dependent rect. 1 9
23 345.81 atmosphere 1000.0 90 > th dose independent rect. 14 5
33 346.05 atmosphere 1015.0 10 < th dose dependent rect. 2 8
35 346.19 atmosphere 995.0 90 > th dose dependent rect. 14 5
36 346.26 atmosphere 1000.0 10 > th dose independent rect. 14 6
40 346.48 temperature 20.0 10 > th dose independent rect. 14 6
43 346.82 wind 9.0 30 < th dose dependent rect. 20 18
50 347.04 wind 7.0 10 < th dose independent rect. 20 18
53 347.14 atmosphere 1010.0 90 < th dose independent rect. 1 9
59 347.57 humidity 90.0 10 > th dose dependent rect. 6 13
68 347.95 wind 7.0 30 < th dose independent rect. 14 6
76 348.05 wind 1.0 10 > th dose independent rect. 14 6
78 348.09 precipitation 0.1 10 < th dose independent rect. 20 18
79 348.09 precipitation 0.1 10 < th dose dependent rect. 20 18
84 348.15 wind 5.0 270 < th dose independent rect. 22 10
86 348.18 humidity 90.0 10 > th dose independent rect. 6 13
89 348.20 precipitation 0.1 30 < th dose independent rect. 14 6
90 348.20 precipitation 0.1 30 < th dose dependent rect. 14 6
98 348.32 temperature 30.0 90 < th dose independent rect. 20 18
101 348.36 humidity 70.0 270 > th dose independent rect. 23 9
106 348.39 temperature 10.0 10 > th dose independent rect. 14 6
108 348.39 atmosphere 1010.0 10 < th dose independent rect. 14 6
110 348.39 temperature 10.0 10 > th dose independent rect. 20 18
111 348.39 atmosphere 995.0 10 > th dose independent rect. 20 18
125 348.52 temperature 10.0 1440 > th dose independent rect. 15 6
129 348.52 temperature 10.0 1440 > th dose independent rect. 21 18
132 348.53 temperature 10.0 270 > th dose independent rect. 23 9
133 348.53 temperature 30.0 270 < th dose independent rect. 23 9
134 348.53 humidity 50.0 270 > th dose independent rect. 23 9
136 348.53 atmosphere 995.0 270 > th dose independent rect. 23 9
137 348.53 temperature 10.0 270 > th dose independent rect. 8 15
141 348.55 radiation 40.0 270 < th dose independent rect. 23 9
145 348.58 radiation 40.0 30 < th dose independent rect. 14 6
170 348.89 atmosphere 1015.0 270 < th dose independent rect. 23 9
171 348.91 wind 9.0 270 < th dose independent rect. 8 15
174 349.01 wind 1.0 90 > th dose independent rect. 1 9
176 349.02 wind 1.0 30 > th dose independent rect. 2 18
186 349.14 wind 9.0 30 < th dose dependent rect. 14 6
192 349.19 wind 5.0 30 < th dose independent rect. 11 3
198 349.24 wind 5.0 270 < th dose independent rect. 8 5
242 349.50 wind 1.0 270 > th dose independent rect. 12 7
249 349.57 wind 3.0 270 > th dose independent rect. 12 5
258 349.61 temperature 10.0 90 > th dose dependent rect. 14 20
270 349.71 temperature 10.0 30 > th dose dependent rect. 14 6
271 349.72 wind 9.0 90 < th dose dependent rect. 9 5
272 349.73 radiation 40.0 10 < th dose independent rect. 14 21
273 349.74 radiation 40.0 270 < th dose independent rect. 14 2
282 349.80 wind 5.0 270 < th dose independent rect. 9 3
293 349.88 radiation 10.0 10 < th dose dependent rect. 7 1
315 349.94 temperature 25.0 720 < th dose independent rect. 18 11
344 350.06 precipitation 0.1 270 < th dose independent rect. 12 7
345 350.06 precipitation 0.1 270 < th dose dependent rect. 12 7
348 350.07 humidity 60.0 90 > th dose independent rect. 1 9
366 350.16 temperature 20.0 10 > th dose independent rect. 14 21
391 350.22 atmosphere 995.0 10 > th dose independent rect. 14 20
404 350.26 atmosphere 1010.0 270 < th dose independent rect. 12 7
423 350.34 temperature 20.0 270 > th dose independent rect. 13 19
465 350.49 temperature 10.0 270 > th dose independent rect. 12 7
480 350.53 wind 7.0 90 < th dose independent rect. 1 9
486 350.58 temperature 25.0 4320 < th dose independent rect. 23 1
490 350.58 wind 9.0 270 < th dose dependent rect. 23 9
494 350.61 radiation 1.0 90 < th dose independent sin 1 NA
517 350.69 wind 7.0 270 < th dose independent rect. 17 21
528 350.76 temperature 10.0 90 > th dose independent rect. 1 9
531 350.76 atmosphere 995.0 90 > th dose independent rect. 1 9
534 350.77 wind 1.0 270 > th dose independent rect. 14 3
540 350.79 precipitation 0.1 270 < th dose independent rect. 23 9
543 350.79 precipitation 0.1 270 < th dose dependent rect. 23 9
549 350.82 precipitation 0.1 270 < th dose independent rect. 8 15
551 350.82 precipitation 0.1 270 < th dose dependent rect. 8 15
552 350.83 radiation 1.0 90 < th dose independent rect. 6 4
569 350.88 radiation 1.0 90 < th dose independent rect. 6 2
580 350.90 radiation 40.0 270 < th dose dependent rect. 23 9
581 350.91 atmosphere 1015.0 30 < th dose independent rect. 20 18
606 351.02 wind 7.0 270 < th dose independent rect. 14 3
608 351.02 radiation 1.0 90 < th dose dependent rect. 6 1
626 351.09 wind 7.0 90 < th dose independent rect. 14 20
627 351.09 radiation 1.0 90 < th dose dependent rect. 6 4
635 351.11 wind 9.0 270 < th dose dependent rect. 8 14
637 351.12 humidity 90.0 90 < th dose independent rect. 2 4
639 351.13 radiation 40.0 4320 < th dose independent rect. 16 5
648 351.17 precipitation 0.1 90 > th dose independent rect. 7 1
658 351.17 precipitation 0.1 90 > th dose dependent rect. 7 1
672 351.20 wind 3.0 270 > th dose independent rect. 15 1
702 351.25 temperature 10.0 270 > th dose independent rect. 14 3
704 351.25 atmosphere 1010.0 270 < th dose independent rect. 14 3
708 351.25 temperature 10.0 270 > th dose independent rect. 17 21
718 351.28 temperature 25.0 1440 < th dose independent rect. 22 5
720 351.28 temperature 30.0 4320 < th dose independent rect. 19 14
721 351.28 atmosphere 1015.0 270 < th dose independent rect. 8 15
731 351.30 temperature 30.0 270 < th dose independent rect. 9 2
734 351.30 temperature 25.0 1440 < th dose independent rect. 21 7
735 351.30 precipitation 0.1 30 > th dose independent rect. 7 7
743 351.30 radiation 30.0 270 < th dose independent rect. 19 18
744 351.30 precipitation 0.1 270 < th dose independent rect. 17 21
747 351.30 precipitation 0.1 30 > th dose dependent rect. 7 7
755 351.30 precipitation 0.1 270 < th dose dependent rect. 17 21
775 351.36 humidity 50.0 270 > th dose independent rect. 14 3
785 351.38 temperature 30.0 4320 < th dose independent rect. 24 9
786 351.38 temperature 30.0 4320 > th dose dependent rect. 8 1
824 351.42 temperature 30.0 4320 > th dose independent rect. 8 1
853 351.43 temperature 25.0 4320 > th dose independent rect. 23 1
886 351.45 humidity 60.0 10 > th dose independent rect. 1 9
902 351.47 precipitation 0.1 270 < th dose independent rect. 14 2
909 351.47 radiation 40.0 270 < th dose dependent rect. 10 1
910 351.47 precipitation 0.1 270 < th dose dependent rect. 14 2
923 351.50 temperature 20.0 10 > th dose independent rect. 2 18
949 351.54 atmosphere 1010.0 30 < th dose independent rect. 14 21
956 351.56 radiation 30.0 270 < th dose independent rect. 10 1
969 351.57 atmosphere 995.0 270 > th dose independent rect. 17 21
979 351.59 wind 7.0 10 < th dose independent rect. 10 15
986 351.61 temperature 30.0 4320 < th dose independent rect. 2 7
991 351.62 precipitation 0.1 10 > th dose independent rect. 5 3