BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0547500 Os10g0547500|AK070040
(485 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02260.1 | chr1:440757-442459 REVERSE LENGTH=503 518 e-147
>AT1G02260.1 | chr1:440757-442459 REVERSE LENGTH=503
Length = 502
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/511 (53%), Positives = 349/511 (68%), Gaps = 41/511 (8%)
Query: 1 MALASLPKVVMGSVAFGVFWMLAVFPSVPFLPIGRTAGALLGAVLMIVFHVISADDAYAS 60
MA+A + K+V+GSVAF +FW+LAVFPSVPFLPIGRTAG+L GA+LM++F VI+ + AYA+
Sbjct: 1 MAMAPVIKLVLGSVAFAIFWILAVFPSVPFLPIGRTAGSLFGAMLMVIFQVITPEQAYAA 60
Query: 61 IDLPILGLLFATMVVGGYLKNAGMFRHLGRLLAWRSQGGRDLMCRVCVVTALASALFTND 120
IDLPILGLLF TMVV YL+ A MF++LG LL+W+S+G +DL+CRVC+V+A++SALFTND
Sbjct: 61 IDLPILGLLFGTMVVSIYLERADMFKYLGTLLSWKSRGPKDLLCRVCLVSAVSSALFTND 120
Query: 121 TCCVVLTEFVLELAAERNLPAKPFLLALATSANIGSSATPIGNPQNLVIAFNSKISFISF 180
T CVVLTEFVL++A ++NLP PFLLALATSANIGSSATPIGNPQNLVIA SKI F F
Sbjct: 121 TSCVVLTEFVLKIARQKNLPPHPFLLALATSANIGSSATPIGNPQNLVIAVQSKIPFWEF 180
Query: 181 LLGILPAMLAGMGINMLMLLCMYWKEL-------------DGGACSPDEVAAGK------ 221
LLG+ PAM+ G+ +N ++LL MYW+ L D + ++V + +
Sbjct: 181 LLGVFPAMIVGITVNAMLLLGMYWRLLSDHKEDEEEVQNADSEVVAQEDVQSHRFSPATF 240
Query: 222 ----------QMEAIEEGRRTALNNNKKDDGDAATPASPE--DDDGGDAESMMSENISTK 269
+M+A E R A + + + + AS E +D ES + N+
Sbjct: 241 SPVSSEDSNLRMDAAETLRNRAGSAGESELISCNSNASREQHNDAESQGESNNTNNMFQT 300
Query: 270 HRWFMQCSEHRRKLFLKSFAYVVTVGMLVAYMLGLNMSWTAITTAIALVVVDFRDAEPCL 329
RW R++ KS Y +T+GML++ ++GLNMSWTAIT A+ALVV+DF+DA P L
Sbjct: 301 KRW--------RRVLWKSSVYFITLGMLISLLMGLNMSWTAITAALALVVLDFKDARPSL 352
Query: 330 DKVSYSLLVFFSGMFVTVSGFNKTGLPGAIWNVMAPYSKINHXXXXXXXXXXXXXXXXXX 389
+KVSYSLL+FF GMF+TV GFNKTG+P A+W++M PY+KI+
Sbjct: 353 EKVSYSLLIFFCGMFITVDGFNKTGIPTALWDLMEPYAKIDQAKGIAVLAVVILVLSNVA 412
Query: 390 XXXPTVLLMGDEVXXXXXXXXXXXVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRA 449
PTVLL+G V ++WLLLAWVSTVAGNL+LLGSAANLIVCEQARRA
Sbjct: 413 SNVPTVLLLGARVAASAMGREEE--KKAWLLLAWVSTVAGNLTLLGSAANLIVCEQARRA 470
Query: 450 TRNAYDLTFWNHVIFGLPSTLVVTAIGIPLI 480
+ Y LTF H FGLPSTL+VTAIG+ LI
Sbjct: 471 VSHGYTLTFTKHFKFGLPSTLIVTAIGLFLI 501
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,496,320
Number of extensions: 370964
Number of successful extensions: 1328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1326
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 383
Effective length of database: 8,310,137
Effective search space: 3182782471
Effective search space used: 3182782471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)