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Os10g0447900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Citrate transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.2 (0.0244) R2 : 0.592
β1 : -1.17 (0.106) R2dD : 0.178 R2D : -0.00161
β2 : 1.01 (0.0555) R2dC : 0.3 R2C : 0.331
β3 : -1.25 (0.108) R2dE : 0.222 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.06) R2dN8 : 0.00574 R2N8 : 0.0417
σ : 0.434
deviance : 87.01
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C
peak time of C : 0.798
E
wheather : temperature
threshold : 31.44
memory length : 9955
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.58 0.432 14.2 -1.29 1 -1.16 0.458 1.55 0.162 1.04 31.94 3463 -- --
86.51 0.433 14.2 -1.15 1.01 -1.22 0.349 -- 0.118 0.849 31.29 9916 -- --
85.34 0.43 14.2 -1.31 1.01 -1.16 -- 1.59 0.168 0.955 35.12 3387 -- --
87.01 0.434 14.2 -1.17 1.01 -1.25 -- -- 0.109 0.798 31.44 9955 -- --
138.81 0.549 14.2 -1.34 -- -1.45 -- 1.46 0.123 -- 121.3 2459 -- --
111.97 0.496 14.1 -0.437 1.07 -- 0.408 -- 0.501 0.923 -- -- -- --
112.65 0.497 14.1 -0.452 1.06 -- -- -- 0.499 0.873 -- -- -- --
140.87 0.553 14.2 -0.973 -- -1.44 -- -- 0.222 -- 154.2 2473 -- --
105.28 0.478 14.2 -- 0.983 -0.725 -- -- 0.433 0.774 52.93 2685 -- --
183.31 0.633 14.1 -0.412 -- -- -- -- 0.519 -- -- -- -- --
118.03 0.508 14.1 -- 1.06 -- -- -- 0.549 0.854 -- -- -- --
159.08 0.587 14.2 -- -- -1.24 -- -- 0.396 -- 190.7 1017 -- --
187.79 0.64 14.1 -- -- -- -- -- 0.565 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.08 radiation 1.0 43200 > th dose independent rect. 18 11
2 79.17 radiation 40.0 14400 < th dose dependent rect. 18 11
3 79.20 humidity 90.0 14400 > th dose dependent rect. 5 2
11 79.91 radiation 40.0 14400 < th dose dependent rect. 18 3
20 80.33 radiation 1.0 43200 < th dose independent rect. 18 11
30 80.46 wind 5.0 43200 > th dose dependent rect. 5 2
34 80.49 radiation 1.0 43200 > th dose independent rect. 18 1
52 80.72 humidity 90.0 14400 < th dose independent rect. 23 17
54 80.76 radiation 30.0 14400 > th dose independent rect. 7 1
71 80.78 humidity 90.0 14400 > th dose dependent rect. 23 19
81 80.87 radiation 1.0 14400 > th dose independent rect. 18 14
91 80.96 humidity 90.0 14400 > th dose independent rect. 23 17
95 80.99 humidity 90.0 14400 > th dose independent rect. 24 15
106 81.08 humidity 90.0 14400 < th dose independent rect. 22 3
107 81.08 radiation 1.0 14400 < th dose independent rect. 18 14
113 81.12 radiation 1.0 14400 > th dose independent rect. 18 18
133 81.27 humidity 90.0 43200 < th dose independent rect. 8 1
137 81.31 radiation 1.0 14400 < th dose independent rect. 18 18
142 81.34 radiation 1.0 43200 < th dose independent rect. 18 3
151 81.35 humidity 90.0 14400 > th dose dependent sin 4 NA
162 81.37 wind 1.0 43200 > th dose dependent rect. 8 4
168 81.41 wind 5.0 43200 < th dose independent rect. 5 1
170 81.42 wind 5.0 43200 > th dose independent rect. 5 1
176 81.46 precipitation 0.1 43200 < th dose independent rect. 5 3
177 81.46 precipitation 0.1 43200 < th dose dependent rect. 5 3
191 81.53 wind 9.0 43200 < th dose dependent rect. 8 4
195 81.55 humidity 90.0 14400 < th dose independent rect. 22 5
198 81.56 wind 7.0 43200 > th dose independent rect. 10 1
201 81.56 wind 7.0 43200 < th dose independent rect. 4 8
204 81.57 precipitation 0.1 43200 > th dose dependent rect. 5 3
205 81.58 radiation 1.0 14400 < th dose independent rect. 24 8
207 81.59 humidity 90.0 43200 > th dose independent rect. 8 1
215 81.60 radiation 1.0 14400 < th dose independent rect. 2 6
220 81.61 radiation 1.0 14400 > th dose independent rect. 4 4
221 81.61 radiation 1.0 14400 < th dose independent rect. 4 4
225 81.61 precipitation 0.1 43200 < th dose independent rect. 2 6
235 81.61 precipitation 0.1 43200 < th dose dependent rect. 2 6
236 81.62 humidity 90.0 14400 < th dose independent rect. 22 10
237 81.62 humidity 90.0 14400 < th dose independent rect. 11 20
240 81.63 precipitation 0.1 43200 > th dose independent rect. 2 6
242 81.64 precipitation 0.1 43200 > th dose independent rect. 5 3
275 81.67 humidity 90.0 14400 > th dose dependent rect. 10 21
283 81.71 radiation 1.0 14400 > th dose independent rect. 6 2
285 81.71 wind 7.0 43200 > th dose independent rect. 3 9
292 81.72 radiation 1.0 14400 < th dose independent rect. 24 12
298 81.73 radiation 30.0 4320 < th dose independent rect. 16 16
299 81.73 radiation 1.0 14400 < th dose independent rect. 20 16
306 81.74 radiation 1.0 14400 < th dose independent rect. 2 10
311 81.75 wind 3.0 43200 > th dose independent rect. 8 4
312 81.75 radiation 1.0 14400 > th dose independent rect. 4 8
313 81.75 radiation 1.0 14400 < th dose independent rect. 4 8
326 81.76 radiation 1.0 14400 < th dose independent rect. 6 2
347 81.79 radiation 1.0 14400 > th dose independent sin 8 NA
352 81.80 radiation 1.0 14400 < th dose independent sin 8 NA
410 81.83 precipitation 0.1 43200 > th dose dependent rect. 2 6
434 81.86 humidity 90.0 14400 < th dose independent sin 9 NA
445 81.87 wind 7.0 43200 < th dose independent rect. 9 2
446 81.87 humidity 90.0 14400 > th dose independent rect. 5 2
472 81.90 wind 3.0 43200 < th dose independent rect. 8 4
515 81.96 wind 3.0 43200 > th dose dependent rect. 4 10
570 82.08 humidity 90.0 43200 > th dose independent rect. 6 7
623 82.14 radiation 40.0 14400 < th dose independent rect. 15 18
643 82.15 radiation 1.0 14400 > th dose dependent rect. 18 1
714 82.26 humidity 90.0 14400 > th dose independent sin 6 NA
722 82.27 humidity 90.0 14400 > th dose independent rect. 22 9
723 82.27 humidity 90.0 14400 < th dose independent rect. 18 13
793 82.34 radiation 30.0 14400 > th dose dependent rect. 16 16
821 82.38 humidity 90.0 14400 > th dose independent rect. 10 21
830 82.39 wind 9.0 43200 < th dose dependent rect. 3 10
896 82.48 radiation 10.0 4320 < th dose independent rect. 17 1
966 82.55 wind 3.0 43200 > th dose dependent sin 5 NA
967 82.55 humidity 90.0 14400 > th dose dependent no NA NA
972 82.56 wind 3.0 43200 < th dose independent rect. 8 1
973 82.56 radiation 30.0 14400 < th dose independent rect. 7 1
991 82.59 humidity 90.0 14400 > th dose dependent rect. 13 23