BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0447900 Os10g0447900|AK072242
         (327 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02260.1  | chr1:440757-442459 REVERSE LENGTH=503              247   5e-66

>AT1G02260.1 | chr1:440757-442459 REVERSE LENGTH=503
          Length = 502

 Score =  247 bits (631), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 145/226 (64%), Gaps = 3/226 (1%)

Query: 99  QHQHPAGLFDGEKDKDDEAIGKRRRWKVIVWKYAVYXXXXXXXXXXXXXXNMSWXXXXXX 158
           + QH      GE +  +    + +RW+ ++WK +VY              NMSW      
Sbjct: 279 REQHNDAESQGESNNTNNMF-QTKRWRRVLWKSSVYFITLGMLISLLMGLNMSWTAITAA 337

Query: 159 XXXXXXDFTDAQACLEKVSYSLLIFFCGMFITVDGFNKTGIPNTLWELVEPYARIDSPKG 218
                 DF DA+  LEKVSYSLLIFFCGMFITVDGFNKTGIP  LW+L+EPYA+ID  KG
Sbjct: 338 LALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPTALWDLMEPYAKIDQAKG 397

Query: 219 XXXXXXXXXXXSNVASNVPTVLLLGTRVXXXXXXXXXXXEKKAWLILAWVSTVAGNLTLL 278
                      SNVASNVPTVLLLG RV           EKKAWL+LAWVSTVAGNLTLL
Sbjct: 398 IAVLAVVILVLSNVASNVPTVLLLGARV--AASAMGREEEKKAWLLLAWVSTVAGNLTLL 455

Query: 279 GSAANLIVCEQARRAQFFGYNLTFWSHLRFGVPSTIIVTAIGLLIV 324
           GSAANLIVCEQARRA   GY LTF  H +FG+PST+IVTAIGL ++
Sbjct: 456 GSAANLIVCEQARRAVSHGYTLTFTKHFKFGLPSTLIVTAIGLFLI 501



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,256,211
Number of extensions: 162206
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,392,385
Effective search space: 1913463780
Effective search space used: 1913463780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)