BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0444400 Os10g0444400|AK121209
(612 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0444400 Appr-1-p processing domain containing protein 1080 0.0
Os03g0151100 Appr-1-p processing domain containing protein 585 e-167
Os01g0948300 Cellular retinaldehyde-binding/triple function... 80 7e-15
Os03g0336500 Appr-1-p processing domain containing protein 75 1e-13
>Os10g0444400 Appr-1-p processing domain containing protein
Length = 612
Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/612 (87%), Positives = 535/612 (87%)
Query: 1 PLPAQXXXXXXXXLISAAMQHRXXXXXXXXXXXXXXXXXXXXXXXXXXXIEPAVTLDQVP 60
PLPAQ LISAAMQHR IEPAVTLDQVP
Sbjct: 1 PLPAQRRHRRRRRLISAAMQHRSPAAATASSGPVAAAASAAMAVPGVGGIEPAVTLDQVP 60
Query: 61 RWSDPDQRLYXXXXXXXXXXXXXXXXXXXXXXXXXXXFLSFSDPLXXXXXXXXXXXXXXX 120
RWSDPDQRLY FLSFSDPL
Sbjct: 61 RWSDPDQRLYAPSSSSAAAAGGVEAGEGGGSEPAASAFLSFSDPLTGDDGGGVTGGGRGG 120
Query: 121 ASRFPVDHEINSRIYLWRGHPWNLEVDAVVNSTNESLDESHSSPGLHAAAGSGLAEECST 180
ASRFPVDHEINSRIYLWRGHPWNLEVDAVVNSTNESLDESHSSPGLHAAAGSGLAEECST
Sbjct: 121 ASRFPVDHEINSRIYLWRGHPWNLEVDAVVNSTNESLDESHSSPGLHAAAGSGLAEECST 180
Query: 181 LGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLES 240
LGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLES
Sbjct: 181 LGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLES 240
Query: 241 IAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTVSSSDTEIYKRLLPLY 300
IAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTVSSSDTEIYKRLLPLY
Sbjct: 241 IAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTVSSSDTEIYKRLLPLY 300
Query: 301 FPRDRQEEEIAVSKLPADVGDENGETVIDERKIRIRPLPAGATDRAATTAPIDLPFDSGL 360
FPRDRQEEEIAVSKLPADVGDENGETVIDERKIRIRPLPAGATDRAATTAPIDLPFDSGL
Sbjct: 301 FPRDRQEEEIAVSKLPADVGDENGETVIDERKIRIRPLPAGATDRAATTAPIDLPFDSGL 360
Query: 361 ASKRSSFKLDSYLDPSFMSLIKDPDLRRKEQWEKSAQAQKGFNYAKLLGYGDLACPSLSA 420
ASKRSSFKLDSYLDPSFMSLIKDPDLRRKEQWEKSAQAQKGFNYAKLLGYGDLACPSLSA
Sbjct: 361 ASKRSSFKLDSYLDPSFMSLIKDPDLRRKEQWEKSAQAQKGFNYAKLLGYGDLACPSLSA 420
Query: 421 AEEYSLHSRYLAKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVL 480
AEEYSLHSRYLAKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVL
Sbjct: 421 AEEYSLHSRYLAKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVL 480
Query: 481 HVVKEFEPLIQKPYSIVYFHSAASLQPQPDLGFMKRLQQILGRKHQRNLHAIYVLHPTLG 540
HVVKEFEPLIQKPYSIVYFHSAASLQPQPDLGFMKRLQQILGRKHQRNLHAIYVLHPTLG
Sbjct: 481 HVVKEFEPLIQKPYSIVYFHSAASLQPQPDLGFMKRLQQILGRKHQRNLHAIYVLHPTLG 540
Query: 541 LRTAILAMQMFVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHDLEVNGGRGLIVD 600
LRTAILAMQMFVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHDLEVNGGRGLIVD
Sbjct: 541 LRTAILAMQMFVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHDLEVNGGRGLIVD 600
Query: 601 PRTKHIYQRPSG 612
PRTKHIYQRPSG
Sbjct: 601 PRTKHIYQRPSG 612
>Os03g0151100 Appr-1-p processing domain containing protein
Length = 395
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/380 (76%), Positives = 313/380 (82%), Gaps = 14/380 (3%)
Query: 51 EPAVTLDQVPRWSDPDQRLYXXXXXXXXXXXXXXXXXXXXXXXXXXXFLSFSDPLXXXXX 110
EPAVTLDQVPRWSD DQRL FLSF+DPL
Sbjct: 28 EPAVTLDQVPRWSDADQRL----------SPSSSPTAAGSDETPASSFLSFADPLIGDGA 77
Query: 111 XXXXXXXXXXASRFPVDHEINSRIYLWRGHPWNLEVDAVVNSTNESLDESHSSPGLHAAA 170
ASRFPVDHEINS+I LWRGHPWNLEVDAVVNSTNE+LDE+HSSPGLHAAA
Sbjct: 78 AAGAGGRG--ASRFPVDHEINSKICLWRGHPWNLEVDAVVNSTNENLDEAHSSPGLHAAA 135
Query: 171 GSGLAEECSTLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCL 230
G GLAEEC+TLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCL
Sbjct: 136 GPGLAEECTTLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCL 195
Query: 231 ELLIENGLESIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTVSSSDT 290
ELLIENGLESIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK KI VVFCT +SSDT
Sbjct: 196 ELLIENGLESIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKGKITAVVFCTTTSSDT 255
Query: 291 EIYKRLLPLYFPRDRQEEEIAVSKLPADVGDENGETVIDERKIRIRPLPAG-ATDRAATT 349
EIYKRLLPLYFPRD++EEEIA KLPADVGDENGET+IDERKIRI+PLPAG A +++A
Sbjct: 256 EIYKRLLPLYFPRDKKEEEIASLKLPADVGDENGETIIDERKIRIKPLPAGSAINKSAAP 315
Query: 350 APIDLPF-DSGLASKRSSFKLDSYLDPSFMSLIKDPDLRRKEQWEKSAQAQKGFNYAKLL 408
AP+D+P DSGL R+SFKLDSYLDP+FMSLIKDPDLRRKEQ EKS QA KGFN+AKL+
Sbjct: 316 APVDIPLSDSGLTRSRNSFKLDSYLDPAFMSLIKDPDLRRKEQLEKSVQANKGFNWAKLV 375
Query: 409 GYGDLACPSLSAAEEYSLHS 428
G+GDL P LSAAE+YSLHS
Sbjct: 376 GFGDLGGPPLSAAEDYSLHS 395
>Os01g0948300 Cellular retinaldehyde-binding/triple function, C-terminal domain
containing protein
Length = 253
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 91/162 (56%), Gaps = 7/162 (4%)
Query: 432 AKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHF---LLRCLDLERFVLHVVKEFEP 488
A A+ + S++ E++++ G D GR ++ VVG F ++ L+++VLH ++ P
Sbjct: 45 APADGEDFSDLEELQVVRVQGTDRAGRRIVRVVGRFFPAPVIGGDRLKKYVLHKLRTELP 104
Query: 489 LIQKPYSIVYFHSAA-SLQPQPDLGFMKRLQQILGRKHQRNLHAIYVLHPTLGLRTAILA 547
+ P+ ++Y HS S P + ++ + + L +++ L +Y LHP L R AI
Sbjct: 105 --EGPFCLLYMHSTVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIAT 162
Query: 548 M-QMFVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHD 588
+ ++F+ G ++ K+ YV RL +L+ + + ++ IPDFV HD
Sbjct: 163 LGRLFLSGGLYWKIKYVSRLEYLWGDIRKGEVEIPDFVIDHD 204
>Os03g0336500 Appr-1-p processing domain containing protein
Length = 201
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 142 WNLE--VDAVVNSTNESLDESHSSPG-LHAAAGSGLAEECSTL----GG--CRTGMAKMT 192
W+++ DA+VN+ NE + G +H AG L E C + G C TG A++T
Sbjct: 34 WSVDGATDAIVNAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSGVRCPTGEARIT 93
Query: 193 NAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLESIAMGCIYTEAKN 252
A+ LP +VIHTVGP Y + E +L++ Y + L+L +NG++ IA+ I
Sbjct: 94 PAFKLPVSRVIHTVGPIYDMDKQP--EVSLNNAYTNSLKLAKQNGIQYIALPAISCGVYR 151
Query: 253 YPREPAAHVAIRTVRRF 269
YP + A+ +A+ T +RF
Sbjct: 152 YPPKEASKIAVSTAQRF 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,531,375
Number of extensions: 758076
Number of successful extensions: 1679
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1675
Number of HSP's successfully gapped: 4
Length of query: 612
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 505
Effective length of database: 11,448,903
Effective search space: 5781696015
Effective search space used: 5781696015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)