Os10g0444400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Appr-1-p processing domain containing protein.
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Os10g0444400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Appr-1-p processing domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.36 | 0.227 | 10.5 | -0.786 | 0.424 | 1.3 | 0.144 | 0.118 | -0.0536 | 1.9 | 12.27 | 368 | -- | -- |
| 23.35 | 0.225 | 10.5 | -0.805 | 0.408 | 1.3 | 0.124 | -- | -0.0589 | 1.94 | 13.21 | 386 | -- | -- |
| 23.41 | 0.225 | 10.5 | -0.789 | 0.407 | 1.3 | -- | 0.126 | -0.0546 | 1.95 | 12.14 | 393 | -- | -- |
| 23.4 | 0.225 | 10.5 | -0.809 | 0.401 | 1.3 | -- | -- | -0.0596 | 2.03 | 13.08 | 396 | -- | -- |
| 26.11 | 0.238 | 10.5 | -0.778 | -- | 1.22 | -- | 0.324 | -0.0422 | -- | 10.64 | 778 | -- | -- |
| 41.67 | 0.303 | 10.5 | -0.512 | 0.365 | -- | 0.297 | -- | 0.131 | 22.1 | -- | -- | -- | -- |
| 42.01 | 0.304 | 10.5 | -0.524 | 0.363 | -- | -- | -- | 0.13 | 22.2 | -- | -- | -- | -- |
| 26.19 | 0.238 | 10.5 | -0.837 | -- | 1.23 | -- | -- | -0.058 | -- | 13.26 | 777 | -- | -- |
| 38.42 | 0.289 | 10.5 | -- | 0.352 | 0.801 | -- | -- | 0.0757 | 1.24 | 18.7 | 393 | -- | -- |
| 50 | 0.33 | 10.5 | -0.519 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 49.26 | 0.328 | 10.5 | -- | 0.36 | -- | -- | -- | 0.189 | 22.1 | -- | -- | -- | -- |
| 42.41 | 0.303 | 10.5 | -- | -- | 0.835 | -- | -- | 0.0788 | -- | 16.82 | 693 | -- | -- |
| 57.11 | 0.353 | 10.5 | -- | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 3 | 23.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 5 | 23.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 7 | 23.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 10 | 23.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 19 | 23.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 30 | 23.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 36 | 23.95 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 127 | 24.21 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 194 | 24.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 196 | 24.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 10 |
| 203 | 24.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 231 | 24.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 234 | 24.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 644 | 24.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 784 | 24.92 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 994 | 25.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |