BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0444400 Os10g0444400|AK121209
(612 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69340.1 | chr1:26066298-26069644 FORWARD LENGTH=563 856 0.0
AT2G40600.1 | chr2:16947012-16948537 REVERSE LENGTH=258 70 2e-12
AT4G35750.1 | chr4:16940865-16941674 REVERSE LENGTH=203 65 1e-10
AT3G10210.1 | chr3:3160416-3161579 REVERSE LENGTH=238 55 1e-07
>AT1G69340.1 | chr1:26066298-26069644 FORWARD LENGTH=563
Length = 562
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/557 (75%), Positives = 462/557 (82%), Gaps = 19/557 (3%)
Query: 54 VTLDQVPRWSDPDQRLYXXXXXXXXXXXXXXXXXXXXXXXXXXXFLSFSDPLXXXXXXXX 113
VTLDQ+PRWSD +QR +++PL
Sbjct: 25 VTLDQIPRWSDVEQR----------------SSLEDETGDPEHSNPRYANPLASSSEAGS 68
Query: 114 XXXXXXXASRFPVDHEINSRIYLWRGHPWNLEVDAVVNSTNESLDESHSSPGLHAAAGSG 173
S+FPVDHEINSRIYLWRG PWNLEVDAVVNSTNE+LDE+HSSPGLH AAG G
Sbjct: 69 SGNGM--VSKFPVDHEINSRIYLWRGEPWNLEVDAVVNSTNENLDEAHSSPGLHVAAGPG 126
Query: 174 LAEECSTLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELL 233
LAE+C+TLGGCRTGMAK+TNAYDLPAR+VIHTVGPKYAVKYHTAAENALSHCYRSCLELL
Sbjct: 127 LAEQCATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELL 186
Query: 234 IENGLESIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTVSSSDTEIY 293
I++GL+SIA+GCIYTEAKNYPREPAAHVAIRTVRRFLEKQK KI+ VVFCT +SSDTEIY
Sbjct: 187 IDSGLQSIALGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTSSDTEIY 246
Query: 294 KRLLPLYFPRDRQEEEIAVSKLPADVGDENGETVIDERKIRIRPLPAGATDRAATTAPID 353
KRLLPLYFPRD EEE+A+SKLPADVGDENGETVIDERKIRI+ LP R+ T P++
Sbjct: 247 KRLLPLYFPRDEHEEEVAISKLPADVGDENGETVIDERKIRIQALPNKPPPRSFPT-PLE 305
Query: 354 LPFDSGLASKRSSFKLDSYLDPSFMSLIKDPDLRRKEQWEKSAQAQKGFNYAKLLGYGDL 413
P +R+S LDSYLDP+FMSLIKDPD RRKEQWEK+AQAQ GFN+ KLLG+GDL
Sbjct: 306 RPSTDLTLLRRNSNHLDSYLDPAFMSLIKDPDERRKEQWEKTAQAQSGFNFVKLLGFGDL 365
Query: 414 ACPSLSAAEEYSLHSRYLAKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCL 473
P LSAAEEYSLHSRYLAKANS+NLSEIAEMKI+YRGGVD+EG PVMVVVGAHFLLRCL
Sbjct: 366 GGPPLSAAEEYSLHSRYLAKANSINLSEIAEMKIVYRGGVDTEGHPVMVVVGAHFLLRCL 425
Query: 474 DLERFVLHVVKEFEPLIQKPYSIVYFHSAASLQPQPDLGFMKRLQQILGRKHQRNLHAIY 533
DLERFVL+V+KEFEP+IQKPYSIVYFHSAASLQ QPDLG+MKRL+QILGRKHQRNL AIY
Sbjct: 426 DLERFVLYVIKEFEPVIQKPYSIVYFHSAASLQVQPDLGWMKRLEQILGRKHQRNLQAIY 485
Query: 534 VLHPTLGLRTAILAMQMFVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHDLEVNG 593
VLHPT L+ IL MQ FVD VWKKVVY DRL+ LF+YVPREQLTIPDFVFQHDLEVNG
Sbjct: 486 VLHPTFHLKATILTMQFFVDNVVWKKVVYADRLLQLFKYVPREQLTIPDFVFQHDLEVNG 545
Query: 594 GRGLIVDPRTKHIYQRP 610
G+GLIVDPRTK++YQRP
Sbjct: 546 GKGLIVDPRTKYVYQRP 562
>AT2G40600.1 | chr2:16947012-16948537 REVERSE LENGTH=258
Length = 257
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 142 WNLEV--DAVVNSTNESLDESHSSPG-LHAAAGSGLAEECSTLGG------CRTGMAKMT 192
W+++ DA+VN NE + + G +H AAG L C + C TG A++T
Sbjct: 92 WSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEVPEVRPGVRCPTGEARIT 151
Query: 193 NAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLESIAMGCIYTEAKN 252
++LPA +VIHTVGP Y + + +L++ Y++ L + EN ++ IA I
Sbjct: 152 PGFNLPASRVIHTVGPIYDSDVN--PQESLTNSYKNSLRVAKENNIKYIAFPAISCGIYG 209
Query: 253 YPREPAAHVAIRTVRRF 269
YP + AA + I T+++F
Sbjct: 210 YPFDEAAAIGISTIKQF 226
>AT4G35750.1 | chr4:16940865-16941674 REVERSE LENGTH=203
Length = 202
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 442 IAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVVKEFEP-LIQKPYSIVYFH 500
I +++I G D GR ++ ++G F R L L+ ++ ++ P L +KP++++Y H
Sbjct: 14 IEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPRLGRKPFAVLYVH 73
Query: 501 SAASLQPQ-PDLGFMKRLQQILGRKHQRNLHAIYVLHPTLGLRTAILAMQMFV-DGEVWK 558
+ P + ++ + + + NL +Y LHP L R + F+ G ++
Sbjct: 74 TGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFLATCGRFLFSGGLYG 133
Query: 559 KVVYVDRLVHLFRYVPREQLTIPDFVFQHD 588
K+ Y+ R+ +L+ +V R ++ +P+FV+ HD
Sbjct: 134 KLRYISRVDYLWEHVRRNEIEMPEFVYDHD 163
>AT3G10210.1 | chr3:3160416-3161579 REVERSE LENGTH=238
Length = 237
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 438 NLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVVKEFEPLI-QKPYSI 496
+ S++ ++ G+D G + +VG +F R + ER ++ ++ + P +
Sbjct: 45 DFSDLDLLQFFTLQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCL 104
Query: 497 VYFHSAASLQPQ-PDLGFMKRLQQILGRKHQRNLHAIYVLHPTLGLRTAILAMQMFVDGE 555
VY HS P + ++ + + L + L +Y +HP L R I + +
Sbjct: 105 VYMHSTVQKDDNSPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSG 164
Query: 556 V-WKKVVYVDRLVHLFRYVPREQLTIPDFVFQHD 588
+ K+ YV RL +L+ + + ++ IPDFV HD
Sbjct: 165 GLYWKIKYVSRLQYLWEDIKKGEVEIPDFVKNHD 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,592,807
Number of extensions: 471904
Number of successful extensions: 1095
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 4
Length of query: 612
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 508
Effective length of database: 8,255,305
Effective search space: 4193694940
Effective search space used: 4193694940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)