Os03g0336500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Appr-1-p processing domain containing protein.
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Os03g0336500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Appr-1-p processing domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.35 | 0.439 | 8.12 | -1.57 | 0.488 | 2.19 | 0.108 | 1.45 | -0.647 | 22.5 | 9.752 | 96 | -- | -- |
| 88.85 | 0.439 | 8.15 | -1.79 | 0.485 | 2.23 | -0.0302 | -- | -0.709 | 22.4 | 6.074 | 98 | -- | -- |
| 87.38 | 0.435 | 8.12 | -1.58 | 0.482 | 2.19 | -- | 1.39 | -0.648 | 22.5 | 9.973 | 99 | -- | -- |
| 88.87 | 0.439 | 8.15 | -1.78 | 0.484 | 2.21 | -- | -- | -0.702 | 22.5 | 5.741 | 98 | -- | -- |
| 92.97 | 0.449 | 8.11 | -1.56 | -- | 2.06 | -- | 1.41 | -0.638 | -- | 7.781 | 304 | -- | -- |
| 136.18 | 0.547 | 8.08 | -1.31 | 0.655 | -- | 0.577 | -- | -0.394 | 18 | -- | -- | -- | -- |
| 136.97 | 0.548 | 8.08 | -1.32 | 0.659 | -- | -- | -- | -0.392 | 18.1 | -- | -- | -- | -- |
| 93.74 | 0.451 | 8.14 | -1.77 | -- | 2.1 | -- | -- | -0.693 | -- | 5.352 | 319 | -- | -- |
| 163.04 | 0.598 | 8.09 | -- | 0.564 | 1.24 | -- | -- | -0.409 | 20.4 | 16.57 | 127 | -- | -- |
| 159.46 | 0.59 | 8.07 | -1.34 | -- | -- | -- | -- | -0.407 | -- | -- | -- | -- | -- |
| 182.94 | 0.633 | 8.05 | -- | 0.678 | -- | -- | -- | -0.245 | 18 | -- | -- | -- | -- |
| 161.56 | 0.592 | 8.04 | -- | -- | 1.25 | -- | -- | -0.346 | -- | 24.1 | 174 | -- | -- |
| 206.77 | 0.671 | 8.04 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.43 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 3 | 80.49 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 8 | 80.94 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 32 | 82.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 35 | 83.09 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 41 | 83.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 83 | 85.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 91 | 85.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 98 | 86.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 107 | 86.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 113 | 86.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 117 | 86.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 122 | 86.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 130 | 86.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 146 | 87.06 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 154 | 87.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 171 | 87.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 175 | 87.38 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 214 | 87.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 218 | 87.78 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 219 | 87.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 227 | 87.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 231 | 87.90 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 236 | 87.93 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 250 | 88.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 265 | 88.13 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 266 | 88.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 267 | 88.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 287 | 88.23 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 293 | 88.26 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 299 | 88.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 10 |
| 369 | 88.57 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 512 | 89.24 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 763 | 90.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 765 | 90.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 795 | 90.52 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 811 | 90.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 830 | 90.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 893 | 90.97 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 903 | 91.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |