BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0336500 Os03g0336500|AK070095
(201 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0336500 Appr-1-p processing domain containing protein 416 e-117
Os08g0139500 129 2e-30
Os06g0696900 Appr-1-p processing domain containing protein 128 3e-30
Os06g0536400 127 5e-30
Os03g0151100 Appr-1-p processing domain containing protein 78 4e-15
Os10g0444400 Appr-1-p processing domain containing protein 75 3e-14
>Os03g0336500 Appr-1-p processing domain containing protein
Length = 201
Score = 416 bits (1068), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MAAAPGRGGGEAFRLSADAGAGALKLQKGDITLWSVDGATDAIVNAANERMLGGGGVDGA 60
MAAAPGRGGGEAFRLSADAGAGALKLQKGDITLWSVDGATDAIVNAANERMLGGGGVDGA
Sbjct: 1 MAAAPGRGGGEAFRLSADAGAGALKLQKGDITLWSVDGATDAIVNAANERMLGGGGVDGA 60
Query: 61 IHRTAGPELVEACRKVPEVKSGVRCPTGEARITPAFKLPVSRVIHTVGPIYDMDKQPEVS 120
IHRTAGPELVEACRKVPEVKSGVRCPTGEARITPAFKLPVSRVIHTVGPIYDMDKQPEVS
Sbjct: 61 IHRTAGPELVEACRKVPEVKSGVRCPTGEARITPAFKLPVSRVIHTVGPIYDMDKQPEVS 120
Query: 121 LNNAYTNSLKLAKQNGIQYIALPAISCGVYRYPPKEASKIAVSTAQRFSNDIKEVHFVLF 180
LNNAYTNSLKLAKQNGIQYIALPAISCGVYRYPPKEASKIAVSTAQRFSNDIKEVHFVLF
Sbjct: 121 LNNAYTNSLKLAKQNGIQYIALPAISCGVYRYPPKEASKIAVSTAQRFSNDIKEVHFVLF 180
Query: 181 SDELYDIWRETAKEFLSQFEK 201
SDELYDIWRETAKEFLSQFEK
Sbjct: 181 SDELYDIWRETAKEFLSQFEK 201
>Os08g0139500
Length = 187
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 65/73 (89%)
Query: 1 MAAAPGRGGGEAFRLSADAGAGALKLQKGDITLWSVDGATDAIVNAANERMLGGGGVDGA 60
MA APG GEAFRLSADAGAGALKL KGDITLWSVDGAT AIVNAANERMLGGGGVDGA
Sbjct: 60 MAVAPGLSSGEAFRLSADAGAGALKLHKGDITLWSVDGATVAIVNAANERMLGGGGVDGA 119
Query: 61 IHRTAGPELVEAC 73
IHR AGPELVE C
Sbjct: 120 IHRAAGPELVEPC 132
>Os06g0696900 Appr-1-p processing domain containing protein
Length = 191
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 66/73 (90%)
Query: 1 MAAAPGRGGGEAFRLSADAGAGALKLQKGDITLWSVDGATDAIVNAANERMLGGGGVDGA 60
MAAA G GGEAFRLSADAGAGALKL K DITLWSVDGAT AIVNAANERMLGGGGVDGA
Sbjct: 64 MAAALGLSGGEAFRLSADAGAGALKLHKDDITLWSVDGATVAIVNAANERMLGGGGVDGA 123
Query: 61 IHRTAGPELVEAC 73
IHR AGPELVEAC
Sbjct: 124 IHRAAGPELVEAC 136
>Os06g0536400
Length = 187
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 66/73 (90%)
Query: 1 MAAAPGRGGGEAFRLSADAGAGALKLQKGDITLWSVDGATDAIVNAANERMLGGGGVDGA 60
MAAAP GGEAFRLSADAGAGALKL K DITLWSVDGAT AIVNAAN+RMLGGGGVDGA
Sbjct: 64 MAAAPRLSGGEAFRLSADAGAGALKLHKDDITLWSVDGATVAIVNAANKRMLGGGGVDGA 123
Query: 61 IHRTAGPELVEAC 73
IHR AGPELVEAC
Sbjct: 124 IHRAAGPELVEAC 136
>Os03g0151100 Appr-1-p processing domain containing protein
Length = 395
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 34 WSVDGATDAIVNAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSGVRCPTGEARIT 93
W+++ DA+VN+ NE + G +H AGP L E C + G C TG A++T
Sbjct: 107 WNLE--VDAVVNSTNENLDEAHSSPG-LHAAAGPGLAEECTTL----GG--CRTGMAKMT 157
Query: 94 PAFKLPVSRVIHTVGPIYDMDKQP--EVSLNNAYTNSLKLAKQNGIQYIALPAISCGVYR 151
A+ LP +VIHTVGP Y + E +L++ Y + L+L +NG++ IA+ I
Sbjct: 158 NAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLESIAMGCIYTEAKN 217
Query: 152 YPPKEASKIAVSTAQRF 168
YP + A+ +A+ T +RF
Sbjct: 218 YPREPAAHVAIRTVRRF 234
>Os10g0444400 Appr-1-p processing domain containing protein
Length = 612
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 34 WSVDGATDAIVNAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSGVRCPTGEARIT 93
W+++ DA+VN+ NE + G +H AG L E C + G C TG A++T
Sbjct: 142 WNLE--VDAVVNSTNESLDESHSSPG-LHAAAGSGLAEECSTL----GG--CRTGMAKMT 192
Query: 94 PAFKLPVSRVIHTVGPIYDMDKQP--EVSLNNAYTNSLKLAKQNGIQYIALPAISCGVYR 151
A+ LP +VIHTVGP Y + E +L++ Y + L+L +NG++ IA+ I
Sbjct: 193 NAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLESIAMGCIYTEAKN 252
Query: 152 YPPKEASKIAVSTAQRF 168
YP + A+ +A+ T +RF
Sbjct: 253 YPREPAAHVAIRTVRRF 269
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,410,498
Number of extensions: 318732
Number of successful extensions: 961
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 6
Length of query: 201
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 105
Effective length of database: 12,023,257
Effective search space: 1262441985
Effective search space used: 1262441985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)