Os06g0696900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Appr-1-p processing domain containing protein.
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Os06g0696900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Appr-1-p processing domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.75 | 0.664 | 3.8 | 0.745 | 0.53 | 2.28 | -1.13 | -0.923 | -0.0367 | 20.9 | 23.44 | 583 | -- | -- |
| 200.64 | 0.66 | 3.82 | 0.678 | 0.526 | 2.52 | -1.01 | -- | -0.0503 | 20.8 | 23.2 | 562 | -- | -- |
| 203.34 | 0.664 | 3.82 | 0.714 | 0.52 | 2.41 | -- | -0.316 | -0.0676 | 21.4 | 23.21 | 577 | -- | -- |
| 203.33 | 0.664 | 3.82 | 0.655 | 0.536 | 2.46 | -- | -- | -0.0762 | 21.4 | 23.11 | 577 | -- | -- |
| 216.09 | 0.685 | 3.81 | 0.838 | -- | 2.27 | -- | -0.769 | 0.0243 | -- | 24.16 | 1515 | -- | -- |
| 277.09 | 0.78 | 3.9 | 0.00841 | 0.301 | -- | -0.865 | -- | -0.464 | 20.8 | -- | -- | -- | -- |
| 279.26 | 0.783 | 3.9 | 0.0338 | 0.305 | -- | -- | -- | -0.465 | 21.7 | -- | -- | -- | -- |
| 216.79 | 0.686 | 3.79 | 0.738 | -- | 2.39 | -- | -- | -0.022 | -- | 23.75 | 1492 | -- | -- |
| 213.24 | 0.68 | 3.85 | -- | 0.506 | 2.15 | -- | -- | -0.186 | 21.4 | 23.2 | 560 | -- | -- |
| 284.8 | 0.789 | 3.9 | 0.0366 | -- | -- | -- | -- | -0.466 | -- | -- | -- | -- | -- |
| 279.29 | 0.782 | 3.9 | -- | 0.305 | -- | -- | -- | -0.469 | 21.7 | -- | -- | -- | -- |
| 225.24 | 0.699 | 3.84 | -- | -- | 2.1 | -- | -- | -0.216 | -- | 23.12 | 409 | -- | -- |
| 284.83 | 0.788 | 3.9 | -- | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 6 | 200.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 21 | 201.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 30 | 201.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 31 | 201.47 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 35 | 201.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 51 | 201.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 52 | 201.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 93 | 203.12 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 137 | 204.35 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 365 | 208.00 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 413 | 208.29 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 495 | 208.80 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 20 |
| 515 | 208.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 519 | 208.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 583 | 209.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 617 | 209.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 636 | 209.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 650 | 209.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 666 | 209.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 731 | 209.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 758 | 210.07 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 22 |
| 858 | 210.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 913 | 210.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |