Os01g0948300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.
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Os01g0948300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.82 | 0.209 | 13.8 | 0.542 | 0.622 | -0.55 | -0.169 | 0.682 | 0.242 | 23.8 | 24.96 | 79 | -- | -- |
| 20.42 | 0.21 | 13.8 | 0.644 | 0.626 | -0.618 | 0.0222 | -- | 0.279 | 23.8 | 24.3 | 65 | -- | -- |
| 19.92 | 0.208 | 13.8 | 0.56 | 0.622 | -0.565 | -- | 0.574 | 0.242 | 23.8 | 25.03 | 83 | -- | -- |
| 20.39 | 0.21 | 13.8 | 0.654 | 0.634 | -0.645 | -- | -- | 0.288 | 23.7 | 23.52 | 8 | -- | -- |
| 32.04 | 0.264 | 13.8 | 0.428 | -- | -0.822 | -- | 0.698 | 0.171 | -- | 29.41 | 866 | -- | -- |
| 25.84 | 0.238 | 13.8 | 0.794 | 0.539 | -- | 0.0101 | -- | 0.38 | 23.5 | -- | -- | -- | -- |
| 25.84 | 0.238 | 13.8 | 0.793 | 0.539 | -- | -- | -- | 0.38 | 23.5 | -- | -- | -- | -- |
| 32.59 | 0.266 | 13.8 | 0.546 | -- | -0.845 | -- | -- | 0.203 | -- | 28.48 | 851 | -- | -- |
| 30.35 | 0.257 | 13.8 | -- | 0.675 | -0.876 | -- | -- | 0.165 | 0.0471 | 24.55 | 93 | -- | -- |
| 44.07 | 0.31 | 13.8 | 0.808 | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
| 42.42 | 0.305 | 13.8 | -- | 0.548 | -- | -- | -- | 0.292 | 23.6 | -- | -- | -- | -- |
| 38.81 | 0.29 | 13.8 | -- | -- | -0.909 | -- | -- | 0.158 | -- | 18.5 | 29675 | -- | -- |
| 61.28 | 0.365 | 13.8 | -- | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 2 | 18.74 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 3 | 18.92 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 4 | 19.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 6 | 19.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 8 | 19.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 9 | 19.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 18 | 19.43 | temperature | 10 | 90 | > th | dose dependent | sin | 12 | NA |
| 21 | 19.44 | temperature | 30 | 90 | < th | dose dependent | sin | 12 | NA |
| 22 | 19.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 24 | 19.45 | temperature | 15 | 270 | > th | dose dependent | sin | 14 | NA |
| 51 | 19.58 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 55 | 19.60 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 56 | 19.61 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 65 | 19.62 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 14 |
| 72 | 19.64 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 75 | 19.64 | humidity | 70 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 79 | 19.65 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 84 | 19.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 86 | 19.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 108 | 19.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 112 | 19.70 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 123 | 19.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 129 | 19.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 141 | 19.74 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 146 | 19.75 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 172 | 19.78 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 192 | 19.79 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 208 | 19.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 211 | 19.80 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 21 |
| 212 | 19.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 224 | 19.82 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 226 | 19.82 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 228 | 19.82 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 243 | 19.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 252 | 19.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 264 | 19.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 267 | 19.84 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 280 | 19.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 286 | 19.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 291 | 19.85 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 292 | 19.85 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 316 | 19.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 338 | 19.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 353 | 19.87 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 377 | 19.88 | humidity | 70 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 405 | 19.88 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 20 |
| 449 | 19.90 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 450 | 19.90 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 454 | 19.90 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 458 | 19.90 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 459 | 19.90 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 463 | 19.90 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 5 |
| 472 | 19.90 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 483 | 19.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 486 | 19.91 | humidity | 70 | 43200 | < th | dose independent | sin | 2 | NA |
| 489 | 19.91 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 511 | 19.91 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 16 |
| 523 | 19.91 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 619 | 19.92 | humidity | 60 | 43200 | < th | dose dependent | sin | 20 | NA |
| 630 | 19.92 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 687 | 19.93 | humidity | 70 | 43200 | > th | dose independent | sin | 1 | NA |
| 712 | 19.93 | humidity | 60 | 43200 | < th | dose dependent | sin | 18 | NA |
| 717 | 19.93 | humidity | 50 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 783 | 19.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 838 | 19.95 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 852 | 19.95 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 893 | 19.96 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 912 | 19.96 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 18 |