BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0948300 Os01g0948300|AK102153
         (253 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10210.1  | chr3:3160416-3161579 REVERSE LENGTH=238            270   6e-73
AT4G35750.1  | chr4:16940865-16941674 REVERSE LENGTH=203          165   2e-41
AT1G69340.1  | chr1:26066298-26069644 FORWARD LENGTH=563           59   2e-09

>AT3G10210.1 | chr3:3160416-3161579 REVERSE LENGTH=238
          Length = 237

 Score =  270 bits (689), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 141/236 (59%), Positives = 172/236 (72%), Gaps = 7/236 (2%)

Query: 9   DFSVVVLGSDFAVDAGAVLLNPAD---REEWHDCLPDLSAPADGEDFSDLEELQVVRVQG 65
           DFSVVVL SD  +DA   L    D   +E WHDC   L      EDFSDL+ LQ   +QG
Sbjct: 4   DFSVVVLASDLGIDARPFLTRSDDVDEQENWHDCPQYLG----DEDFSDLDLLQFFTLQG 59

Query: 66  TDXXXXXXXXXXXXFFPAPVIGGDRLKKYVLHKLRTELPEGPFCLLYMHSTVQSDDNNPG 125
            D            +FPA V+  +RLKKY+  K+  + PEGP CL+YMHSTVQ DDN+PG
Sbjct: 60  LDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMHSTVQKDDNSPG 119

Query: 126 MSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGGLYWKIKYVSRLEYL 185
           ++ILR +YEDLP + K+RLQ++YF+HPGLRSRL IATLGRL LSGGLYWKIKYVSRL+YL
Sbjct: 120 ITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSGGLYWKIKYVSRLQYL 179

Query: 186 WGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEPDPLHLADMPAVGYSLGRYEDKW 241
           W DI+KGEVEIPDFV +HD +LEHRPLTDYGIEPDP  L+++ +  +SL RYE++W
Sbjct: 180 WEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPDPFQLSEVQSSSFSLNRYENRW 235



>AT4G35750.1 | chr4:16940865-16941674 REVERSE LENGTH=203
          Length = 202

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 116/183 (63%)

Query: 55  LEELQVVRVQGTDXXXXXXXXXXXXFFPAPVIGGDRLKKYVLHKLRTELPEGPFCLLYMH 114
           +E+L++ ++ G D            FFPA  +  D LKKY+  K+   L   PF +LY+H
Sbjct: 14  IEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPRLGRKPFAVLYVH 73

Query: 115 STVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGGLYW 174
           + VQ  +N PG+S LR +Y+ +P   ++ LQ +YFLHPGL+SRL +AT GR   SGGLY 
Sbjct: 74  TGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFLATCGRFLFSGGLYG 133

Query: 175 KIKYVSRLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEPDPLHLADMPAVGYSL 234
           K++Y+SR++YLW  +R+ E+E+P+FV DHD  LE+RP+ DYG E D   +    AV  S+
Sbjct: 134 KLRYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESDHARVFAGAAVDSSV 193

Query: 235 GRY 237
             +
Sbjct: 194 SSF 196



>AT1G69340.1 | chr1:26066298-26069644 FORWARD LENGTH=563
          Length = 562

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 45  APADGEDFSDLEELQVVRVQGTDXXXXXXXXXXXXFFPAPVIGGDRLKKYVLHKLRTELP 104
           A A+  + S++ E+++V   G D             F    +  +R   YV+ +    + 
Sbjct: 384 AKANSINLSEIAEMKIVYRGGVDTEGHPVMVVVGAHFLLRCLDLERFVLYVIKEFEPVI- 442

Query: 105 EGPFCLLYMHSTVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLG 164
           + P+ ++Y HS   S    P +  ++ + + L  +++  LQ +Y LHP    +  I T+ 
Sbjct: 443 QKPYSIVYFHSAA-SLQVQPDLGWMKRLEQILGRKHQRNLQAIYVLHPTFHLKATILTM- 500

Query: 165 RLFLSGGLYWKIKYVSRLEYLWGDIRKGEVEIPDFVIDHD 204
           + F+   ++ K+ Y  RL  L+  + + ++ IPDFV  HD
Sbjct: 501 QFFVDNVVWKKVVYADRLLQLFKYVPREQLTIPDFVFQHD 540



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,003,665
Number of extensions: 258092
Number of successful extensions: 419
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 3
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)