BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0948300 Os01g0948300|AK102153
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0948300 Cellular retinaldehyde-binding/triple function... 486 e-138
Os04g0561200 Cellular retinaldehyde-binding/triple function... 153 1e-37
Os02g0668500 Cellular retinaldehyde-binding/triple function... 137 9e-33
Os10g0444400 Appr-1-p processing domain containing protein 67 1e-11
>Os01g0948300 Cellular retinaldehyde-binding/triple function, C-terminal domain
containing protein
Length = 253
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/253 (95%), Positives = 241/253 (95%)
Query: 1 MALAQGTGDFSVVVLGSDFAVDAGAVLLNPADREEWHDCLPDLSAPADGEDFSDLEELQV 60
MALAQGTGDFSVVVLGSDFAVDAGAVLLNPADREEWHDCLPDLSAPADGEDFSDLEELQV
Sbjct: 1 MALAQGTGDFSVVVLGSDFAVDAGAVLLNPADREEWHDCLPDLSAPADGEDFSDLEELQV 60
Query: 61 VRVQGTDXXXXXXXXXXXXFFPAPVIGGDRLKKYVLHKLRTELPEGPFCLLYMHSTVQSD 120
VRVQGTD FFPAPVIGGDRLKKYVLHKLRTELPEGPFCLLYMHSTVQSD
Sbjct: 61 VRVQGTDRAGRRIVRVVGRFFPAPVIGGDRLKKYVLHKLRTELPEGPFCLLYMHSTVQSD 120
Query: 121 DNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGGLYWKIKYVS 180
DNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGGLYWKIKYVS
Sbjct: 121 DNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGGLYWKIKYVS 180
Query: 181 RLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEPDPLHLADMPAVGYSLGRYEDK 240
RLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEPDPLHLADMPAVGYSLGRYEDK
Sbjct: 181 RLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEPDPLHLADMPAVGYSLGRYEDK 240
Query: 241 WSPEDRWYSRNYM 253
WSPEDRWYSRNYM
Sbjct: 241 WSPEDRWYSRNYM 253
>Os04g0561200 Cellular retinaldehyde-binding/triple function, C-terminal domain
containing protein
Length = 226
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 103/171 (60%), Gaps = 5/171 (2%)
Query: 55 LEELQVVRVQGTDXXXXXXXXXXXXFFPAPVIGGD-----RLKKYVLHKLRTELPEGPFC 109
LE+ +V+ VQG D FPA +GG LK YV ++ + + F
Sbjct: 32 LEKKRVITVQGRDKAGRPIVRIVGKNFPARELGGGGHAEAALKGYVRRRVTPAIGDAEFV 91
Query: 110 LLYMHSTVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLS 169
++YMHS V +N PG+ +R YE +P +ERL +YFLHPGL+SRL +TLGR S
Sbjct: 92 VVYMHSGVDRRENFPGVGAVRTAYESMPAAVRERLHAVYFLHPGLQSRLFFSTLGRFLFS 151
Query: 170 GGLYWKIKYVSRLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEPD 220
GLY K++YVSRLEYLW +RKGE+++P+ V HD LE RPL DYGIE
Sbjct: 152 SGLYGKLRYVSRLEYLWAHVRKGELDVPEAVRRHDDELEQRPLMDYGIEAS 202
>Os02g0668500 Cellular retinaldehyde-binding/triple function, C-terminal domain
containing protein
Length = 211
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Query: 55 LEELQVVRVQGTDXXXXXXXXXXXXFFPAPVIGGDR---LKKYVLHKLRTELPEGPFCLL 111
LE + + + G D +FPA +GG L+ YV ++ E+ E F ++
Sbjct: 19 LERSRAITLNGRDKRGRALVRIVGKYFPARALGGRAEAALRGYVRRRVLPEIGEREFVVV 78
Query: 112 YMHSTVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGG 171
Y+HS V DN PG++ +R YE LP KERL+ +YF+HPG ++RL ATLGR S G
Sbjct: 79 YVHSLVDRGDNFPGVAAIRAAYEALPAAAKERLRAVYFVHPGFQARLFFATLGRFLFSSG 138
Query: 172 LYWKIKYVSRLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEP 219
LY K++Y+SRLEYLW + KGE+E+P+ HD+ LE RPL DYGIE
Sbjct: 139 LYEKLRYMSRLEYLWEHVSKGEMEVPECARRHDEELERRPLMDYGIEA 186
>Os10g0444400 Appr-1-p processing domain containing protein
Length = 612
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 45 APADGEDFSDLEELQVVRVQGTDXXXXXXXXXXXXFFPAPVIGGDRLKKYVLHKLRTELP 104
A A+ + S++ E++++ G D F ++ L+++VLH ++ P
Sbjct: 432 AKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHF---LLRCLDLERFVLHVVKEFEP 488
Query: 105 --EGPFCLLYMHSTVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIAT 162
+ P+ ++Y HS S P + ++ + + L +++ L +Y LHP L R AI
Sbjct: 489 LIQKPYSIVYFHSAA-SLQPQPDLGFMKRLQQILGRKHQRNLHAIYVLHPTLGLRTAILA 547
Query: 163 LGRLFLSGGLYWKIKYVSRLEYLWGDIRKGEVEIPDFVIDHD 204
+ ++F+ G ++ K+ YV RL +L+ + + ++ IPDFV HD
Sbjct: 548 M-QMFVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHD 588
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.143 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,746,545
Number of extensions: 424537
Number of successful extensions: 648
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 4
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)