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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0561200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.25 (0.107) R2 : 0.86
β1 : -0.877 (0.414) R2dD : 0.00445 R2D : 0.0719
β2 : 1.05 (0.158) R2dC : 0.0137 R2C : -0.00416
β3 : -6.43 (0.315) R2dE : 0.487 R2E : 0.769
β4 : 3.9 (0.647) R2dD*C : 0.0112 R2D*C : 0.0158
β5 : 5.76 (1.19) R2dD*E : 0.0406 R2D*E : 0.263
γ1 : -0.386 (0.199) R2dN8 : 0.00328 R2N8 : 0.0259
σ : 1.21
deviance : 659.12
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_____
C
peak time of C : 2.76
E
wheather : temperature
threshold : 21.31
memory length : 23437
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.8
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
659.12 1.21 6.25 -0.877 1.05 -6.43 3.9 5.76 -0.386 2.76 21.31 23437 2.8 --
698.87 1.23 6.57 -0.63 1.03 -7.14 3.62 -- -0.463 2.37 21.39 28719 2.84 --
687.18 1.22 6.12 -0.381 1.01 -6.2 -- 7.25 -0.153 2.27 21.9 25736 2.55 --
730.71 1.26 6.56 -0.966 0.947 -7.63 -- -- -0.401 2.14 21.2 27067 2.86 --
735.09 1.26 6.1 -0.327 -- -6.38 -- 7.26 -0.152 -- 21.98 25340 0.917 --
1707.57 1.94 7.34 -9.21 0.805 -- 3.57 -- -3.91 2.78 -- -- -- --
1750.54 1.96 7.36 -9.3 0.814 -- -- -- -3.93 2.17 -- -- -- --
768.42 1.29 6.58 -0.558 -- -7.99 -- -- -0.29 -- 21.1 26792 2.36e-07 --
734.77 1.26 6.49 -- 0.799 -8.24 -- -- -0.182 1.32 21 26727 1.86e-06 --
1790.16 1.98 7.35 -9.27 -- -- -- -- -3.91 -- -- -- -- --
4029.77 2.97 7.13 -- 0.64 -- -- -- -2.89 1.86 -- -- -- --
772.11 1.29 6.52 -- -- -8.23 -- -- -0.192 -- 21.2 26746 0.000656 --
4054.6 2.97 7.12 -- -- -- -- -- -2.88 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 618.40 radiation 1.0 43200 < th dose dependent rect. 7 1
2 623.61 radiation 1.0 43200 > th dose independent rect. 7 5
3 623.69 radiation 1.0 43200 < th dose independent rect. 7 5
6 630.15 radiation 1.0 43200 < th dose dependent rect. 7 5
9 631.32 radiation 1.0 43200 < th dose independent rect. 7 2
10 631.68 radiation 1.0 43200 > th dose independent rect. 7 2
27 652.00 radiation 30.0 43200 < th dose independent rect. 16 15
28 652.70 radiation 1.0 43200 < th dose dependent rect. 9 3
29 653.23 radiation 30.0 43200 < th dose independent rect. 16 1
31 654.57 radiation 1.0 43200 > th dose independent rect. 9 3
32 654.76 radiation 30.0 43200 < th dose independent rect. 16 8
36 655.15 radiation 30.0 43200 < th dose independent rect. 16 3
40 655.37 radiation 1.0 43200 < th dose independent rect. 9 3
42 655.66 radiation 30.0 43200 < th dose independent rect. 16 10
44 656.13 radiation 30.0 43200 < th dose independent rect. 16 12
53 662.28 humidity 90.0 43200 > th dose dependent rect. 24 1
55 662.75 humidity 90.0 43200 > th dose dependent rect. 24 8
56 663.28 radiation 10.0 43200 < th dose independent rect. 5 1
73 668.69 radiation 10.0 43200 < th dose independent rect. 1 5
75 668.80 radiation 10.0 43200 < th dose independent rect. 23 7
90 670.29 radiation 10.0 43200 < th dose independent rect. 17 2
94 670.36 radiation 10.0 43200 < th dose independent rect. 17 7
97 670.44 radiation 10.0 43200 < th dose independent rect. 17 11
114 673.31 radiation 1.0 43200 < th dose dependent rect. 4 10
116 673.32 radiation 1.0 43200 < th dose dependent rect. 20 18
125 673.80 humidity 70.0 43200 < th dose independent rect. 7 1
137 675.44 humidity 90.0 43200 > th dose dependent rect. 23 17
139 675.70 radiation 30.0 43200 > th dose dependent rect. 16 16
178 676.39 humidity 70.0 43200 > th dose independent rect. 7 1
203 676.90 temperature 20.0 43200 < th dose independent rect. 5 1
219 677.36 radiation 1.0 43200 < th dose dependent rect. 4 7
231 677.66 humidity 90.0 43200 > th dose dependent sin 9 NA
250 678.86 precipitation 0.1 43200 > th dose dependent rect. 4 1
261 680.07 radiation 1.0 43200 < th dose dependent sin 6 NA
270 680.94 humidity 90.0 43200 > th dose dependent rect. 13 16
272 681.11 radiation 1.0 43200 < th dose dependent rect. 4 5
282 681.29 humidity 90.0 43200 > th dose dependent rect. 13 18
287 681.51 radiation 10.0 43200 > th dose dependent rect. 17 13
311 682.20 temperature 20.0 43200 > th dose independent rect. 5 1
331 683.09 temperature 20.0 43200 < th dose independent rect. 1 1
338 683.33 temperature 20.0 43200 < th dose dependent rect. 24 1
361 684.31 temperature 20.0 43200 > th dose independent rect. 1 1
375 685.42 temperature 20.0 43200 < th dose dependent rect. 24 3
384 685.88 precipitation 0.1 43200 > th dose independent rect. 4 1
385 686.23 temperature 20.0 43200 < th dose dependent rect. 2 1
407 687.01 temperature 20.0 43200 < th dose independent rect. 24 6
431 688.03 radiation 10.0 43200 > th dose dependent rect. 17 1
452 688.33 temperature 20.0 43200 > th dose independent rect. 24 6
458 688.38 precipitation 0.1 43200 < th dose independent rect. 4 1
459 688.38 precipitation 0.1 43200 < th dose dependent rect. 4 1
516 689.35 temperature 20.0 43200 < th dose independent rect. 22 1
556 691.21 radiation 40.0 43200 < th dose independent rect. 6 2
561 691.50 radiation 30.0 43200 > th dose dependent rect. 7 1
582 691.70 radiation 40.0 43200 < th dose independent rect. 1 7
588 691.90 radiation 40.0 43200 < th dose independent rect. 3 5
597 692.13 radiation 40.0 43200 < th dose independent rect. 23 9
753 698.74 temperature 20.0 43200 > th dose independent rect. 14 1
760 698.91 humidity 90.0 43200 > th dose independent rect. 23 2
766 699.15 humidity 90.0 43200 > th dose dependent no NA NA
815 702.14 temperature 20.0 43200 < th dose independent rect. 14 1
841 703.72 wind 1.0 43200 < th dose dependent rect. 20 9
849 704.02 radiation 30.0 43200 > th dose independent rect. 16 16
860 704.66 humidity 90.0 43200 > th dose independent rect. 22 4
866 705.01 radiation 1.0 43200 < th dose dependent rect. 6 23
867 705.02 humidity 90.0 43200 > th dose independent rect. 14 14
881 706.08 humidity 90.0 43200 > th dose independent rect. 16 12
928 707.99 radiation 1.0 43200 < th dose dependent rect. 6 20
982 709.55 temperature 20.0 43200 < th dose dependent sin 12 NA