BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0415600 Os10g0415600|AK070876
(775 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0415600 Similar to Acylamino acid-releasing enzyme 1564 0.0
Os10g0415800 Similar to Acylamino acid-releasing enzyme 1003 0.0
Os06g0215300 TolB, C-terminal domain containing protein 89 9e-18
Os06g0215400 TolB, C-terminal domain containing protein 83 1e-15
>Os10g0415600 Similar to Acylamino acid-releasing enzyme
Length = 775
Score = 1564 bits (4049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/775 (98%), Positives = 762/775 (98%)
Query: 1 MATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAI 60
MATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAI
Sbjct: 1 MATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAI 60
Query: 61 VSVGQTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIR 120
VSVGQTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIR
Sbjct: 61 VSVGQTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIR 120
Query: 121 NSEDDSPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQP 180
NSEDDSPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQP
Sbjct: 121 NSEDDSPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQP 180
Query: 181 KPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGI 240
KPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGI
Sbjct: 181 KPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGI 240
Query: 241 PRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEA 300
PRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEA
Sbjct: 241 PRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEA 300
Query: 301 DKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKI 360
DKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKI
Sbjct: 301 DKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKI 360
Query: 361 DWPADGKLEGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI 420
DWPADGKLEGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI
Sbjct: 361 DWPADGKLEGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI 420
Query: 421 LXXXXXXXXXXXXXPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW 480
L PQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW
Sbjct: 421 LSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW 480
Query: 481 EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATR 540
EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATR
Sbjct: 481 EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATR 540
Query: 541 PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDV 600
PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDV
Sbjct: 541 PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDV 600
Query: 601 NDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMV 660
NDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMV
Sbjct: 601 NDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMV 660
Query: 661 GTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQDLR 720
GTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQDLR
Sbjct: 661 GTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQDLR 720
Query: 721 VPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKHMSK 775
VPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKHMSK
Sbjct: 721 VPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKHMSK 775
>Os10g0415800 Similar to Acylamino acid-releasing enzyme
Length = 782
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/772 (63%), Positives = 594/772 (76%), Gaps = 10/772 (1%)
Query: 12 EKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQTDLLAN 71
EK PLGMD +EYASQSKLLQEF P+I AW+F + E+ S A+ S+ QT+LLAN
Sbjct: 4 EKDNPLGMDALASEEYASQSKLLQEFTNAPSIDGAWVFQTNNEDRSTAMYSISQTNLLAN 63
Query: 72 KKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDDSPTKLE 131
KR ++L SHI +N +N +DFQWSPFPI+M GVSAV+PSPSG KLL++RN E SPTKLE
Sbjct: 64 NKRKYILFSHIMRNGTNLLDFQWSPFPIQMDGVSAVVPSPSGSKLLVVRNGEKGSPTKLE 123
Query: 132 VWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKK 191
+ +E EIH+AQSVHG LY DEWF GISWNQEETL+AY+AE+ P+PKP F+D+GY+K
Sbjct: 124 IVDQSHVEKEIHVAQSVHGPLYTDEWFHGISWNQEETLIAYIAEDSPEPKPVFDDTGYRK 183
Query: 192 AGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIW 251
GSSEKDC +WKG+GDWEE WGETYSKK P+LFV++I+SGEVRA KGI R+LSVGQV+W
Sbjct: 184 EGSSEKDCNNWKGQGDWEEDWGETYSKKGRPSLFVLDINSGEVRAAKGISRSLSVGQVVW 243
Query: 252 APSSS----HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNV 307
AP SS L+FV W NG+Q TPRKLGIKYC NRPC+LY+ PF EE+D +
Sbjct: 244 APPSSCGRQKYLIFVGWLEHNGFQNTPRKLGIKYCSNRPCSLYSTLCPF-EESDVDNAPA 302
Query: 308 SKGETAPTT---KLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKIDWPA 364
S + P + LT +SSAFFPRFS DGK LVF+SA A+DSG HNAT+S+HKI+WP+
Sbjct: 303 SDSKLEPASVAINLTPSISSAFFPRFSKDGKLLVFLSANRAVDSGAHNATDSLHKINWPS 362
Query: 365 DGKLEG-LSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVILXX 423
D K++ L + DV+PIVMCPQDGCFPGLYCS +L NPWL+D TMIL+S W S EVIL
Sbjct: 363 DWKMDQYLEITDVIPIVMCPQDGCFPGLYCSSMLSNPWLSDRCTMILTSAWRSTEVILSI 422
Query: 424 XXXXXXXXXXXPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQWEWQ 483
P++S+YSW+ LA+D N+LAVSSS I PQI YG +V + W W
Sbjct: 423 DVLSGKATRISPENSEYSWSALAVDGHNVLAVSSSPIDPPQIKYGHQVSLKDQTCTWVWD 482
Query: 484 EIAT-PFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATRPT 542
E+ P + ++K+ A+L+ H+FSILKIP++N S+ L+DG+KLPFEAIFVS KDS+ +PT
Sbjct: 483 EVNNNPLMAANNKVKALLSHHQFSILKIPVTNPSDDLSDGSKLPFEAIFVSCKDSSHKPT 542
Query: 543 IVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDVND 602
I+VLHGGPH+V SSYSK+ AFL S G+NLL+VNYRG+ GFGEEALQSLPG +GSQDV D
Sbjct: 543 ILVLHGGPHSVSVSSYSKTSAFLASLGFNLLIVNYRGTPGFGEEALQSLPGKVGSQDVQD 602
Query: 603 VLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMVGT 662
LTALD+VI+ GLIDASKVAV+G SHGGFLTTHLIGQAP F+ AAARNPVCNLSLM+GT
Sbjct: 603 CLTALDYVIEGGLIDASKVAVIGISHGGFLTTHLIGQAPDRFMVAAARNPVCNLSLMIGT 662
Query: 663 TDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQDLRVP 722
TDIP+WC+ G EG+ SE PS D L F+QKSPI+HISKV P L LLG DLRVP
Sbjct: 663 TDIPDWCYAVACGSEGRQHASESPSPDHLRLFYQKSPIAHISKVKAPLLMLLGGADLRVP 722
Query: 723 VSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKHMS 774
+SNGLQYAR L+E G E +I++FP+D+H ++ PQSDFESFLNIGVWFKKH+S
Sbjct: 723 ISNGLQYARALRERGGEIRIMMFPDDIHEINIPQSDFESFLNIGVWFKKHLS 774
>Os06g0215300 TolB, C-terminal domain containing protein
Length = 683
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 541 PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDV 600
P +V HGGP S+ + S+G+ L VNY GS GFG E + L G G DV
Sbjct: 447 PLLVKTHGGPTAETRGILDLSVQYWTSRGWAYLDVNYGGSTGFGREYRERLLGKWGIVDV 506
Query: 601 NDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMV 660
+D + +++ G +D ++ + G S GG+ T + TF A A+ + +LSL+
Sbjct: 507 DDCCSCARVLVESGKVDERRLCITGRSAGGYTTLASLAFR-DTFKAGASLYGIGDLSLLR 565
Query: 661 GTTDIPEWCFVE-IYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQDL 719
T E + + + G E ++++SPI+ + K + P + G D
Sbjct: 566 AETHKFESHYTDNLVGNEN--------------AYYERSPINFVDKFTCPVILFQGLDDK 611
Query: 720 RVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQS 757
VP + + LKE G+ ++ + + HG K ++
Sbjct: 612 VVPPDQARKIYKALKEKGLPVALVEYEGEQHGFRKAEN 649
>Os06g0215400 TolB, C-terminal domain containing protein
Length = 679
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 541 PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDV 600
P +V HGGP + + S+G+ + VNY GS G+G + + L G G DV
Sbjct: 439 PLLVRTHGGPTDEARGVLDLGVQYWTSRGWAFVDVNYGGSTGYGRKFRERLLGQWGVVDV 498
Query: 601 NDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMV 660
ND + F+++ G +DA ++ V G S GGF T + A R S +
Sbjct: 499 NDCCSCATFLVETGRVDAQRLCVTGESAGGFTTLACL----------AFRQIFKAGSSLY 548
Query: 661 GTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLC----QFHQKSPISHISKVSTPTLFLLGA 716
G D+ + G + F Y D+L + ++SPI+ + + S P + G
Sbjct: 549 GIADLASL-------RAGMHKFEAY-YIDNLVGNRKAYFERSPINFVDRFSCPIILFQGL 600
Query: 717 QDLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQS 757
+D V + +K+ G+ ++ + + HG K ++
Sbjct: 601 EDTVVSPVQATTIYKAIKDKGLPVALVEYEGEQHGFRKAEN 641
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,030,249
Number of extensions: 1252783
Number of successful extensions: 2692
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2687
Number of HSP's successfully gapped: 4
Length of query: 775
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 666
Effective length of database: 11,344,475
Effective search space: 7555420350
Effective search space used: 7555420350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)