Os06g0215400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TolB, C-terminal domain containing protein.
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Os06g0215400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TolB, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.9 | 0.289 | 9.67 | 0.0398 | 0.619 | 1.57 | -0.755 | 1.92 | 0.2 | 22.4 | 1.237 | 10092 | -- | -- |
| 46.7 | 0.318 | 9.67 | -0.103 | 0.55 | 1.52 | -0.824 | -- | 0.224 | 22.3 | 1.472 | 10158 | -- | -- |
| 40.09 | 0.295 | 9.67 | 0.0665 | 0.641 | 1.59 | -- | 1.93 | 0.205 | 22.4 | 1.24 | 10109 | -- | -- |
| 45.07 | 0.313 | 9.67 | -0.221 | 0.58 | 1.24 | -- | -- | 0.216 | 22.1 | 1.68 | 10059 | -- | -- |
| 51.32 | 0.334 | 9.67 | -0.0252 | -- | 1.81 | -- | 1.71 | 0.205 | -- | 1.42 | 11161 | -- | -- |
| 76.61 | 0.41 | 9.63 | -0.0696 | 0.642 | -- | -0.702 | -- | 0.467 | 22.6 | -- | -- | -- | -- |
| 78.56 | 0.415 | 9.63 | -0.0428 | 0.644 | -- | -- | -- | 0.468 | 22.8 | -- | -- | -- | -- |
| 52.03 | 0.336 | 9.71 | -0.306 | -- | 1.58 | -- | -- | 0.118 | -- | 1.64 | 9737 | -- | -- |
| 46.22 | 0.317 | 9.67 | -- | 0.62 | 1.17 | -- | -- | 0.216 | 22.7 | 1.674 | 10090 | -- | -- |
| 104.27 | 0.477 | 9.61 | -0.0293 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 78.61 | 0.415 | 9.63 | -- | 0.644 | -- | -- | -- | 0.472 | 22.8 | -- | -- | -- | -- |
| 53.93 | 0.342 | 9.7 | -- | -- | 1.59 | -- | -- | 0.102 | -- | 1.64 | 9733 | -- | -- |
| 104.3 | 0.477 | 9.61 | -- | -- | -- | -- | -- | 0.475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 2 | 34.95 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 4 | 34.97 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 36 | 35.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 46 | 35.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 51 | 35.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 96 | 36.28 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 101 | 36.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 113 | 36.34 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 116 | 36.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 119 | 36.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 123 | 36.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 133 | 36.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 147 | 36.44 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 207 | 36.68 | radiation | 1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 214 | 36.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 217 | 36.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 249 | 36.82 | radiation | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 340 | 37.03 | radiation | 20 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 391 | 37.21 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 535 | 37.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 539 | 37.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 573 | 37.46 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 574 | 37.46 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 662 | 37.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 669 | 37.52 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 720 | 37.58 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 722 | 37.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 17 |
| 723 | 37.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 19 |
| 726 | 37.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 739 | 37.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 950 | 37.85 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |