BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0215400 Os06g0215400|AK101083
(679 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0215400 TolB, C-terminal domain containing protein 1383 0.0
Os06g0215300 TolB, C-terminal domain containing protein 954 0.0
Os10g0415600 Similar to Acylamino acid-releasing enzyme 82 9e-16
Os10g0415800 Similar to Acylamino acid-releasing enzyme 77 4e-14
>Os06g0215400 TolB, C-terminal domain containing protein
Length = 679
Score = 1383 bits (3580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/679 (98%), Positives = 668/679 (98%)
Query: 1 MHSQXXXXXXXXXXXPYGSWESPISAAAVSAAGRTVEGLAVAGDGRLLWVETRPEEGGRA 60
MHSQ PYGSWESPISAAAVSAAGRTVEGLAVAGDGRLLWVETRPEEGGRA
Sbjct: 1 MHSQASAAAEKAVVAPYGSWESPISAAAVSAAGRTVEGLAVAGDGRLLWVETRPEEGGRA 60
Query: 61 VLVKEAAEPGGDAVDVTPEGFAVRSLAQEYGGGAFAVQGDVVVFSNYSDQRLYKQTIGDN 120
VLVKEAAEPGGDAVDVTPEGFAVRSLAQEYGGGAFAVQGDVVVFSNYSDQRLYKQTIGDN
Sbjct: 61 VLVKEAAEPGGDAVDVTPEGFAVRSLAQEYGGGAFAVQGDVVVFSNYSDQRLYKQTIGDN 120
Query: 121 SAQPLTPDYTGSVLRYADGVFDPHFCRYVTIMEDHRKDSSNPVTTIAAVTISDRDANEPT 180
SAQPLTPDYTGSVLRYADGVFDPHFCRYVTIMEDHRKDSSNPVTTIAAVTISDRDANEPT
Sbjct: 121 SAQPLTPDYTGSVLRYADGVFDPHFCRYVTIMEDHRKDSSNPVTTIAAVTISDRDANEPT 180
Query: 181 VLVSGNDFYAFPRIDPIKRRMAWIEWSNPNMSWDKAQLWVGYFSEKGEVHNKICIAGGDP 240
VLVSGNDFYAFPRIDPIKRRMAWIEWSNPNMSWDKAQLWVGYFSEKGEVHNKICIAGGDP
Sbjct: 181 VLVSGNDFYAFPRIDPIKRRMAWIEWSNPNMSWDKAQLWVGYFSEKGEVHNKICIAGGDP 240
Query: 241 TLVESPTEPKWTSKGELFFITDRESGFWNIYKWDEESNLIVQLYSLDAEFSKPMWIFGVS 300
TLVESPTEPKWTSKGELFFITDRESGFWNIYKWDEESNLIVQLYSLDAEFSKPMWIFGVS
Sbjct: 241 TLVESPTEPKWTSKGELFFITDRESGFWNIYKWDEESNLIVQLYSLDAEFSKPMWIFGVS 300
Query: 301 SYGFLGKDDTSNKIVCCYRQNGRSCAGVLDHDSGSFSELDIPFSSVTNIVSGDGFFYVEG 360
SYGFLGKDDTSNKIVCCYRQNGRSCAGVLDHDSGSFSELDIPFSSVTNIVSGDGFFYVEG
Sbjct: 301 SYGFLGKDDTSNKIVCCYRQNGRSCAGVLDHDSGSFSELDIPFSSVTNIVSGDGFFYVEG 360
Query: 361 ASATLPVSIAKVTLDEKRKTATNFSIVWSSSEDVMQYASYFSLPEFMEFPTVVPGQKAYA 420
ASATLPVSIAKVTLDEKRKTATNFSIVWSSSEDVMQYASYFSLPEFMEFPTVVPGQKAYA
Sbjct: 361 ASATLPVSIAKVTLDEKRKTATNFSIVWSSSEDVMQYASYFSLPEFMEFPTVVPGQKAYA 420
Query: 421 YFYAPHNHIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWAFVDVNYGGSTG 480
YFYAPHNHIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWAFVDVNYGGSTG
Sbjct: 421 YFYAPHNHIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWAFVDVNYGGSTG 480
Query: 481 YGRKFRERLLGQWGVVDVNDCCSCATFLVETGRVDAQRLCVTGESAGGFTTLACLAFRQI 540
YGRKFRERLLGQWGVVDVNDCCSCATFLVETGRVDAQRLCVTGESAGGFTTLACLAFRQI
Sbjct: 481 YGRKFRERLLGQWGVVDVNDCCSCATFLVETGRVDAQRLCVTGESAGGFTTLACLAFRQI 540
Query: 541 FKAGSSLYGIADLASLRAGMHKFEAYYIDNLVGNRKAYFERSPINFVDRFSCPIILFQGL 600
FKAGSSLYGIADLASLRAGMHKFEAYYIDNLVGNRKAYFERSPINFVDRFSCPIILFQGL
Sbjct: 541 FKAGSSLYGIADLASLRAGMHKFEAYYIDNLVGNRKAYFERSPINFVDRFSCPIILFQGL 600
Query: 601 EDTVVSPVQATTIYKAIKDKGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHF 660
EDTVVSPVQATTIYKAIKDKGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHF
Sbjct: 601 EDTVVSPVQATTIYKAIKDKGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHF 660
Query: 661 KVADGITPIKIDNFDEPSL 679
KVADGITPIKIDNFDEPSL
Sbjct: 661 KVADGITPIKIDNFDEPSL 679
>Os06g0215300 TolB, C-terminal domain containing protein
Length = 683
Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/660 (68%), Positives = 547/660 (82%), Gaps = 7/660 (1%)
Query: 16 PYGSWESPISAAAVSAAGRTVEGLAVAGDGRLLWVETRPEEGGRAVLVKEAAEPGGDAVD 75
PYGSW SPI+A VS A + + G+A+AGDGRLLW+E RPEE GR V+VKE +P VD
Sbjct: 31 PYGSWRSPITADVVSGADKRLGGIALAGDGRLLWIEGRPEEKGRMVIVKEDDKP----VD 86
Query: 76 VTPEGFAVRSLAQEYGGGAFAVQGDVVVFSNYSDQRLYKQTIGDNSAQPLTPDYTGSVLR 135
+ P+ FA R+LAQEYGGGAF+V+ +VVVFSNY DQRLYKQ+ PLTPDY G +
Sbjct: 87 IIPQEFAARTLAQEYGGGAFSVKDNVVVFSNYKDQRLYKQSTKTGVPVPLTPDYGGPDVS 146
Query: 136 YADGVFDPHFCRYVTIMEDHRKDSSNPVTTIAAVTISDRDANEPTVLVSGNDFYAFPRID 195
YADGVFDPHF RYVT++ED RK S NP TTIAA+++S+ EP VL+SGNDFYAFPRID
Sbjct: 147 YADGVFDPHFSRYVTVIEDRRKSSLNPTTTIAAISLSNGVVQEPKVLISGNDFYAFPRID 206
Query: 196 PIKRRMAWIEWSNPNMSWDKAQLWVGYFSEKGEVHNKICIAGGDPTLVESPTEPKWTSKG 255
+RMAWIEWS+PNM WDK++LWVGYFSE G++ ++C+AG +P LVESPTEPKW+ KG
Sbjct: 207 HNNKRMAWIEWSHPNMPWDKSELWVGYFSESGDLTKRVCVAGSNPMLVESPTEPKWSPKG 266
Query: 256 ELFFITDRESGFWNIYKWDEESNLIVQLYSLDAEFSKPMWIFGVSSYGFLGKDDTSNKIV 315
ELFF+TDR SGFWNIYKW E +N ++ +Y+LDAEF++P+W+FG+SSYGFLG+ SN IV
Sbjct: 267 ELFFLTDRGSGFWNIYKWVEHTNEVISVYTLDAEFTRPLWVFGISSYGFLGE---SNHIV 323
Query: 316 CCYRQNGRSCAGVLDHDSGSFSELDIPFSSVTNIVSGDGFFYVEGASATLPVSIAKVTLD 375
YRQ+GRS GVLD D GS S LD PF+ ++N+V+G+ +FY+EGASAT+P+SIAKV L+
Sbjct: 324 FSYRQHGRSYLGVLDSDIGSVSLLDTPFTDLSNVVTGNDYFYIEGASATVPMSIAKVALN 383
Query: 376 EKRKTATNFSIVWSSSEDVMQYASYFSLPEFMEFPTVVPGQKAYAYFYAPHNHIFQGSSD 435
E R +FSI+WSSS DV+QY+S+FS PEF+EF T GQKAYAYFY P N FQG D
Sbjct: 384 EDRTKVVSFSIIWSSSSDVVQYSSFFSAPEFVEFSTSSTGQKAYAYFYPPSNPNFQGLPD 443
Query: 436 EKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWAFVDVNYGGSTGYGRKFRERLLGQWGV 495
EKPPLLV+THGGPT E RG+LDL VQYWTSRGWA++DVNYGGSTG+GR++RERLLG+WG+
Sbjct: 444 EKPPLLVKTHGGPTAETRGILDLSVQYWTSRGWAYLDVNYGGSTGFGREYRERLLGKWGI 503
Query: 496 VDVNDCCSCATFLVETGRVDAQRLCVTGESAGGFTTLACLAFRQIFKAGSSLYGIADLAS 555
VDV+DCCSCA LVE+G+VD +RLC+TG SAGG+TTLA LAFR FKAG+SLYGI DL+
Sbjct: 504 VDVDDCCSCARVLVESGKVDERRLCITGRSAGGYTTLASLAFRDTFKAGASLYGIGDLSL 563
Query: 556 LRAGMHKFEAYYIDNLVGNRKAYFERSPINFVDRFSCPIILFQGLEDTVVSPVQATTIYK 615
LRA HKFE++Y DNLVGN AY+ERSPINFVD+F+CP+ILFQGL+D VV P QA IYK
Sbjct: 564 LRAETHKFESHYTDNLVGNENAYYERSPINFVDKFTCPVILFQGLDDKVVPPDQARKIYK 623
Query: 616 AIKDKGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHFKVADGITPIKIDNFD 675
A+K+KGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVG+FKVAD ITPIKI+NFD
Sbjct: 624 ALKEKGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGNFKVADDITPIKIENFD 683
>Os10g0415600 Similar to Acylamino acid-releasing enzyme
Length = 775
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 439 PLLVRTHGGPTDEARGVLDLGVQYWTSRGWAFVDVNYGGSTGYGRKFRERLLGQWGVVDV 498
P +V HGGP + + S+G+ + VNY GS G+G + + L G G DV
Sbjct: 541 PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDV 600
Query: 499 NDCCSCATFLVETGRVDAQRLCVTGESAGGFTTLACL----------AFRQIFKAGSSLY 548
ND + F+++ G +DA ++ V G S GGF T + A R S +
Sbjct: 601 NDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMV 660
Query: 549 GIADLASL-------RAGMHKFEAY-YIDNLVGNRKAYFERSPINFVDRFSCPIILFQGL 600
G D+ + G + F Y D+L + ++SPI+ + + S P + G
Sbjct: 661 GTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLC----QFHQKSPISHISKVSTPTLFLLGA 716
Query: 601 EDTVVSPVQATTIYKAIKDKGLPVALVEYEGEQHGFRKAEN 641
+D V + +K+ G+ ++ + + HG K ++
Sbjct: 717 QDLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQS 757
>Os10g0415800 Similar to Acylamino acid-releasing enzyme
Length = 782
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 406 FMEFPTVVPGQKAYAYFYAPHNHIFQGSSD--EKPPLLVRTHGGPTDEARGVLDLGVQYW 463
++ P P P IF D KP +LV HGGP + +
Sbjct: 507 ILKIPVTNPSDDLSDGSKLPFEAIFVSCKDSSHKPTILV-LHGGPHSVSVSSYSKTSAFL 565
Query: 464 TSRGWAFVDVNYGGSTGYGRKFRERLLGQWGVVDVNDCCSCATFLVETGRVDAQRLCVTG 523
S G+ + VNY G+ G+G + + L G+ G DV DC + +++E G +DA ++ V G
Sbjct: 566 ASLGFNLLIVNYRGTPGFGEEALQSLPGKVGSQDVQDCLTALDYVIEGGLIDASKVAVIG 625
Query: 524 ESAGGFTTLACL----------AFRQIFKAGSSLYGIADLA----SLRAG----MHKFEA 565
S GGF T + A R S + G D+ ++ G H E+
Sbjct: 626 ISHGGFLTTHLIGQAPDRFMVAAARNPVCNLSLMIGTTDIPDWCYAVACGSEGRQHASES 685
Query: 566 YYIDNLVGNRKAYFERSPINFVDRFSCPIILFQGLEDTVVSPVQATTIYKAIKDKGLPVA 625
D+L + ++++SPI + + P+++ G D V +A++++G +
Sbjct: 686 PSPDHL----RLFYQKSPIAHISKVKAPLLMLLGGADLRVPISNGLQYARALRERGGEIR 741
Query: 626 LVEYEGEQH 634
++ + + H
Sbjct: 742 IMMFPDDIH 750
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,326,653
Number of extensions: 1175864
Number of successful extensions: 2413
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 4
Length of query: 679
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 571
Effective length of database: 11,396,689
Effective search space: 6507509419
Effective search space used: 6507509419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)