Os06g0215300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TolB, C-terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0215300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : TolB, C-terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.22 | 0.352 | 10.7 | 1.15 | 1.52 | -0.555 | 0.451 | -0.467 | -0.106 | 18.7 | 20.11 | 292 | -- | -- |
| 56.32 | 0.35 | 10.6 | 1.21 | 1.52 | -0.458 | 0.23 | -- | -0.0647 | 18.8 | 20.98 | 349 | -- | -- |
| 56.69 | 0.351 | 10.7 | 1.16 | 1.52 | -0.536 | -- | -0.356 | -0.1 | 18.7 | 20.1 | 279 | -- | -- |
| 56.44 | 0.35 | 10.6 | 1.2 | 1.53 | -0.46 | -- | -- | -0.0691 | 18.8 | 20.95 | 350 | -- | -- |
| 169.37 | 0.609 | 10.6 | 1.05 | -- | -0.305 | -- | -0.16 | -0.135 | -- | 22.1 | 1500 | -- | -- |
| 64.41 | 0.376 | 10.7 | 1.05 | 1.46 | -- | 0.217 | -- | -0.183 | 18.8 | -- | -- | -- | -- |
| 64.53 | 0.376 | 10.7 | 1.05 | 1.46 | -- | -- | -- | -0.182 | 18.8 | -- | -- | -- | -- |
| 126.61 | 0.524 | 10.6 | 0.882 | -- | 0.689 | -- | -- | -0.413 | -- | 26.23 | 339 | -- | -- |
| 91.97 | 0.449 | 10.7 | -- | 1.45 | -0.181 | -- | -- | -0.265 | 18.7 | 20.95 | 350 | -- | -- |
| 175.61 | 0.619 | 10.6 | 1.02 | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
| 93.57 | 0.452 | 10.7 | -- | 1.44 | -- | -- | -- | -0.299 | 18.9 | -- | -- | -- | -- |
| 128.29 | 0.528 | 10.7 | -- | -- | 1.09 | -- | -- | -0.616 | -- | 26.23 | 403 | -- | -- |
| 202.94 | 0.665 | 10.7 | -- | -- | -- | -- | -- | -0.323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.59 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 8 |
| 3 | 48.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 35 | 51.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 50 | 51.88 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 21 |
| 52 | 51.96 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 53 | 52.01 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 10 |
| 56 | 52.09 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 19 |
| 58 | 52.12 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 74 | 52.39 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 17 |
| 102 | 52.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 110 | 52.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 140 | 53.09 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 157 | 53.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 162 | 53.30 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 185 | 53.51 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 1 |
| 219 | 53.64 | temperature | 25 | 10 | < th | dose dependent | sin | 6 | NA |
| 234 | 53.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 11 |
| 255 | 53.86 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 5 |
| 280 | 53.95 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 17 |
| 291 | 54.00 | humidity | 80 | 270 | < th | dose independent | rect. | 1 | 14 |
| 336 | 54.29 | temperature | 20 | 10 | > th | dose dependent | sin | 8 | NA |
| 355 | 54.39 | humidity | 80 | 270 | < th | dose independent | sin | 4 | NA |
| 367 | 54.44 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 12 |
| 387 | 54.51 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 18 |
| 390 | 54.54 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 9 |
| 445 | 54.73 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 446 | 54.74 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 20 |
| 485 | 54.86 | humidity | 80 | 270 | > th | dose independent | sin | 5 | NA |
| 547 | 55.06 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 11 |
| 751 | 55.52 | humidity | 70 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 782 | 55.59 | humidity | 90 | 270 | < th | dose dependent | sin | 7 | NA |
| 794 | 55.61 | humidity | 70 | 30 | > th | dose independent | rect. | 4 | 19 |
| 859 | 55.74 | humidity | 70 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 904 | 55.85 | humidity | 70 | 30 | > th | dose independent | rect. | 6 | 17 |
| 961 | 55.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |