BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0411100 Os10g0411100|Os10g0411100
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0411100 Protein of unknown function DUF620 family protein 251 3e-67
Os03g0167400 Protein of unknown function DUF620 family protein 189 2e-48
Os03g0606100 Protein of unknown function DUF620 family protein 99 2e-21
Os05g0252100 Protein of unknown function DUF620 family protein 80 1e-15
Os03g0267500 Protein of unknown function DUF620 family protein 77 7e-15
>Os10g0411100 Protein of unknown function DUF620 family protein
Length = 216
Score = 251 bits (641), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/216 (68%), Positives = 147/216 (68%)
Query: 1 MAPQLATLXXXXXXXXXXXXXXXKTGXXXXXXXXXXXXIPLRFLSXXXXXXXXXXXXXXX 60
MAPQLATL KTG IPLRFLS
Sbjct: 1 MAPQLATLAEEPGGGEEAARARRKTGLHAALHRWARARIPLRFLSGGGGGGGVGGGGGGG 60
Query: 61 RPSPDLRVLLSVLACPLSPVPVLPRHPRNVASSAQYILEQFRATTGCAKIEGAAKSMYAA 120
RPSPDLRVLLSVLACPLSPVPVLPRHPRNVASSAQYILEQFRATTGCAKIEGAAKSMYAA
Sbjct: 61 RPSPDLRVLLSVLACPLSPVPVLPRHPRNVASSAQYILEQFRATTGCAKIEGAAKSMYAA 120
Query: 121 GRVRMAMAPEPXXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEMAVAGHAVAAGCDGRVAW 180
GRVRMAMAPEP HEGCFVVWQLVPDMWLVEMAVAGHAVAAGCDGRVAW
Sbjct: 121 GRVRMAMAPEPGGGIGIGGGGGGGHEGCFVVWQLVPDMWLVEMAVAGHAVAAGCDGRVAW 180
Query: 181 RRTPWLDAHXXXXXXXXXXXXXXQVGTPHVPAIWPF 216
RRTPWLDAH QVGTPHVPAIWPF
Sbjct: 181 RRTPWLDAHAARGGGARPLRRALQVGTPHVPAIWPF 216
>Os03g0167400 Protein of unknown function DUF620 family protein
Length = 366
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 103/130 (79%), Gaps = 1/130 (0%)
Query: 61 RPSPDLRVLLSVLACPLSPVPVLPRHPRNVASSAQYILEQFRATTGCAKIEGAAKSMYAA 120
RP+ DLRVLLSVLACPLSPVP+LPR PR+VASSAQYI+EQFRATTGC KIEGA KSMYAA
Sbjct: 49 RPAADLRVLLSVLACPLSPVPILPRLPRHVASSAQYIIEQFRATTGCGKIEGAVKSMYAA 108
Query: 121 GRVRMAMAPEP-XXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEMAVAGHAVAAGCDGRVA 179
GRVR+AM +P HEG FV+WQL P MW+VEMAVAG VAAG DGRVA
Sbjct: 109 GRVRLAMLQDPAGGGAGGGGGGGRGHEGSFVMWQLAPSMWIVEMAVAGQHVAAGSDGRVA 168
Query: 180 WRRTPWLDAH 189
WRRTPW+ AH
Sbjct: 169 WRRTPWVGAH 178
>Os03g0606100 Protein of unknown function DUF620 family protein
Length = 792
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 65 DLRVLLSVLACPLSPVPVLPRHP------RNV---ASSAQYILEQFRATTGCAKIEGAAK 115
DLR+LL V+ PL+PV V P ++ SSAQYIL+Q+ A +G K+ + +
Sbjct: 270 DLRLLLGVMGAPLAPVHVSAAEPLPHLSIKDTPIETSSAQYILQQYLAASGGQKLLASVR 329
Query: 116 SMYAAGRVRM-AMAPEPXXXXXXXXXXXXXHE-GCFVVWQLVPDMWLVEMAVAGHAVAAG 173
+ Y G+VRM A E E G FV+WQ+ P+MW +E+AV G V AG
Sbjct: 330 NAYTMGKVRMVATEFETAGRLVKNRNAARCAEPGRFVLWQMAPEMWYIELAVGGSKVHAG 389
Query: 174 CDGRVAWRRTPWLDAH 189
C+G++ WR TPWL AH
Sbjct: 390 CNGKLVWRHTPWLGAH 405
>Os05g0252100 Protein of unknown function DUF620 family protein
Length = 488
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 18/143 (12%)
Query: 65 DLRVLLSVLACPLSPVPVLPRH--------------PRNV-ASSAQYILEQFRATTGCAK 109
+++++L V+ PL P V R P ++ AS A+YI+EQ+ A G
Sbjct: 65 EVQLMLGVVGAPLVPQAVEARKAMVAGRGVGGEGEEPLDLEASKARYIVEQYVAAAGGEA 124
Query: 110 IEGAAKSMYAAGRVRMAMAPEPXXXXXXXXXXXXXHE--GCFVVWQLVPDMWLVEMAVAG 167
GAA SMYA G+VRM E G FVVWQ PD+W VEM VAG
Sbjct: 125 ALGAATSMYAMGKVRMRTTTTSKANKGKVMGVAAGGEVAGGFVVWQKKPDLWCVEMVVAG 184
Query: 168 H-AVAAGCDGRVAWRRTPWLDAH 189
++AG DG+VAWR+TPW +AH
Sbjct: 185 GVKMSAGSDGKVAWRQTPWQEAH 207
>Os03g0267500 Protein of unknown function DUF620 family protein
Length = 441
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 25/150 (16%)
Query: 65 DLRVLLSVLACPLSPVPV--LPRHPRNV-----------ASSAQYILEQFRATTGCAKIE 111
+L+++L V+ PL P+PV + P +V +S+A+YI++Q+ A +G
Sbjct: 71 ELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPIESSTAKYIIQQYIAASGGEWAL 130
Query: 112 GAAKSMYAAGRVRMAMAPEPXXXXX------------XXXXXXXXHEGCFVVWQLVPDMW 159
+MYA G+VRM A G FV+WQ P++W
Sbjct: 131 NKVTNMYAMGKVRMTAAELNSSDADGGGGGGGGHRGGKKSSKNGGEVGGFVLWQKKPELW 190
Query: 160 LVEMAVAGHAVAAGCDGRVAWRRTPWLDAH 189
+E+ V+G ++AG DG+VAWR+TPW +H
Sbjct: 191 SLELVVSGCKISAGSDGKVAWRQTPWHQSH 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.136 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,312,655
Number of extensions: 173046
Number of successful extensions: 578
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 5
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)