BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0408700 Os10g0408700|AK068095
         (78 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0408700  Similar to GAMYB-binding protein (Fragment)         152   5e-38
Os07g0690400  Similar to Calmodulin-binding protein phosphatase   131   1e-31
Os03g0301700  Similar to Calmodulin-binding protein phosphatase    97   3e-21
Os09g0459600  Similar to Calmodulin-binding protein phosphatase    77   3e-15
Os02g0567200  Protein phosphatase 2C-like domain containing ...    73   4e-14

>Os10g0408700 Similar to GAMYB-binding protein (Fragment)
          Length = 78

 Score =  152 bits (384), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MAISGEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERV 60
          MAISGEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERV
Sbjct: 1  MAISGEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERV 60

Query: 61 SASGGEVGRLNLFGGQEF 78
          SASGGEVGRLNLFGGQEF
Sbjct: 61 SASGGEVGRLNLFGGQEF 78



>Os07g0690400 Similar to Calmodulin-binding protein phosphatase
          Length = 431

 Score =  131 bits (330), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/73 (90%), Positives = 71/73 (97%)

Query: 5   GEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERVSASG 64
           GEVSGTTATLVV++GFTVTV SVGDSRCILDTQGGEVQLLTVD+ LE+NAEERERV+ASG
Sbjct: 128 GEVSGTTATLVVVDGFTVTVASVGDSRCILDTQGGEVQLLTVDHRLEENAEERERVTASG 187

Query: 65  GEVGRLNLFGGQE 77
           GEVGRLNLFGGQE
Sbjct: 188 GEVGRLNLFGGQE 200



>Os03g0301700 Similar to Calmodulin-binding protein phosphatase
          Length = 432

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 65/73 (89%)

Query: 5   GEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERVSASG 64
           GE SGTTATLVV++GFTVTV SVGDSRCILDTQGG + LLTVD+ LE+N EERERV+ASG
Sbjct: 129 GEASGTTATLVVVDGFTVTVASVGDSRCILDTQGGVISLLTVDHRLEENVEERERVTASG 188

Query: 65  GEVGRLNLFGGQE 77
           GEV RLNL GGQE
Sbjct: 189 GEVSRLNLCGGQE 201



>Os09g0459600 Similar to Calmodulin-binding protein phosphatase
          Length = 422

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 51/73 (69%)

Query: 5   GEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERVSASG 64
            E SGTT T VVI+ + VTV SVGDSRCIL++  G +  L+ D+  + N +E +RV+A G
Sbjct: 125 AETSGTTVTFVVIDEWVVTVASVGDSRCILESADGSLYHLSADHRFDSNQDEVQRVTACG 184

Query: 65  GEVGRLNLFGGQE 77
            +VG+LNL GG E
Sbjct: 185 SKVGKLNLVGGPE 197



>Os02g0567200 Protein phosphatase 2C-like domain containing protein
          Length = 442

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 8   SGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERVSASGGEV 67
           SGTT T V+I+G  +TV SVGDSRC+L+ +G  +  L+ D+  + + EE +RV+ SGG+V
Sbjct: 138 SGTTVTFVIIDGLFITVASVGDSRCVLEAEGS-IYHLSADHRFDASKEEVDRVTESGGDV 196

Query: 68  GRLNLFGGQE 77
           GRLN+ GG E
Sbjct: 197 GRLNVVGGAE 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,552,893
Number of extensions: 85782
Number of successful extensions: 223
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)