Os07g0690400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin-binding protein phosphatase.
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Os07g0690400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin-binding protein phosphatase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.16 | 0.226 | 9.81 | -0.872 | 0.485 | 1.2 | 0.253 | -1.86 | -0.15 | 3 | 10.02 | 714 | -- | -- |
| 25.77 | 0.236 | 9.77 | -0.547 | 0.41 | 1.14 | 0.0951 | -- | -0.0635 | 2.62 | 9.728 | 846 | -- | -- |
| 23.31 | 0.225 | 9.81 | -0.871 | 0.558 | 1.23 | -- | -1.97 | -0.153 | 3.06 | 7.151 | 615 | -- | -- |
| 25.79 | 0.237 | 9.77 | -0.551 | 0.404 | 1.14 | -- | -- | -0.0612 | 2.53 | 9.848 | 856 | -- | -- |
| 31.62 | 0.262 | 9.82 | -0.894 | -- | 1.3 | -- | -1.49 | -0.165 | -- | 1.154 | 989 | -- | -- |
| 43.18 | 0.308 | 9.74 | -0.248 | 0.528 | -- | -0.0323 | -- | 0.118 | 0.915 | -- | -- | -- | -- |
| 43.19 | 0.308 | 9.74 | -0.247 | 0.529 | -- | -- | -- | 0.118 | 0.922 | -- | -- | -- | -- |
| 33.51 | 0.27 | 9.78 | -0.595 | -- | 1.28 | -- | -- | -0.0861 | -- | 10.69 | 1001 | -- | -- |
| 32.78 | 0.267 | 9.75 | -- | 0.445 | 0.904 | -- | -- | 0.0318 | 2.36 | 9.582 | 776 | -- | -- |
| 60.59 | 0.364 | 9.73 | -0.227 | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
| 44.79 | 0.313 | 9.73 | -- | 0.525 | -- | -- | -- | 0.146 | 0.902 | -- | -- | -- | -- |
| 41.74 | 0.301 | 9.76 | -- | -- | 1.04 | -- | -- | 0.0132 | -- | 11.49 | 982 | -- | -- |
| 61.95 | 0.367 | 9.72 | -- | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 7 | 22.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 24 | 23.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 29 | 23.17 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 38 | 23.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 39 | 23.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 43 | 23.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 72 | 23.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 81 | 23.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 89 | 23.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 94 | 23.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 106 | 23.73 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 119 | 23.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 124 | 23.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 125 | 23.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 129 | 23.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 134 | 23.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 139 | 23.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 373 | 24.97 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 428 | 25.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 765 | 25.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 821 | 25.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 936 | 25.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |