Os10g0408700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAMYB-binding protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os10g0408700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to GAMYB-binding protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.41 | 0.386 | 9.59 | 0.236 | 1.64 | -0.813 | -0.646 | 0.0556 | 0.424 | 21.2 | 78.13 | 759 | -- | -- |
| 67.03 | 0.381 | 9.59 | 0.251 | 1.63 | -0.846 | -0.611 | -- | 0.43 | 21.3 | 78 | 806 | -- | -- |
| 68.08 | 0.384 | 9.59 | 0.259 | 1.64 | -0.827 | -- | -0.308 | 0.433 | 21.1 | 78 | 769 | -- | -- |
| 68.31 | 0.385 | 9.59 | 0.271 | 1.63 | -0.857 | -- | -- | 0.428 | 21.3 | 78 | 814 | -- | -- |
| 144.55 | 0.563 | 9.55 | 0.256 | -- | -0.422 | -- | 0.343 | 0.401 | -- | 78 | 769 | -- | -- |
| 80.16 | 0.42 | 9.58 | 0.173 | 1.19 | -- | -0.609 | -- | 0.41 | 21.5 | -- | -- | -- | -- |
| 81.53 | 0.423 | 9.58 | 0.196 | 1.19 | -- | -- | -- | 0.411 | 21.4 | -- | -- | -- | -- |
| 145.3 | 0.564 | 9.55 | 0.242 | -- | -0.42 | -- | -- | 0.397 | -- | 78 | 769 | -- | -- |
| 70.04 | 0.39 | 9.59 | -- | 1.57 | -0.839 | -- | -- | 0.418 | 21.5 | 79 | 914 | -- | -- |
| 164.85 | 0.6 | 9.55 | 0.203 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 82.54 | 0.425 | 9.58 | -- | 1.19 | -- | -- | -- | 0.39 | 21.5 | -- | -- | -- | -- |
| 146.14 | 0.565 | 9.56 | -- | -- | -0.421 | -- | -- | 0.365 | -- | 79 | 914 | -- | -- |
| 165.94 | 0.601 | 9.55 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.42 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 3 | 64.48 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 20 | 64.86 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 23 | 64.95 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 31 | 65.08 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 84 | 65.78 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 127 | 66.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 142 | 66.26 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 148 | 66.34 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 171 | 66.46 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 1 | 12 |
| 180 | 66.51 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 183 | 66.52 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 204 | 66.64 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 210 | 66.66 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 299 | 67.08 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 301 | 67.08 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 21 |
| 311 | 67.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 317 | 67.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 409 | 67.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 472 | 67.70 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 473 | 67.71 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 544 | 67.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 548 | 67.94 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 556 | 67.96 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 602 | 68.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 629 | 68.14 | temperature | 25.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 632 | 68.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 634 | 68.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 680 | 68.28 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 733 | 68.39 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 758 | 68.45 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 785 | 68.49 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 799 | 68.53 | humidity | 80.0 | 720 | > th | dose independent | rect. | 10 | 23 |
| 819 | 68.56 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 830 | 68.58 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 842 | 68.60 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 856 | 68.63 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 891 | 68.67 | humidity | 80.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 915 | 68.70 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 975 | 68.80 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 977 | 68.80 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 999 | 68.84 | humidity | 80.0 | 720 | > th | dose independent | rect. | 13 | 23 |