BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0408700 Os10g0408700|AK068095
         (78 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09160.2  | chr1:2953199-2955059 REVERSE LENGTH=429            114   1e-26
AT1G68410.1  | chr1:25650262-25652255 REVERSE LENGTH=437          103   1e-23
AT1G47380.1  | chr1:17373004-17375305 REVERSE LENGTH=429           84   2e-17

>AT1G09160.2 | chr1:2953199-2955059 REVERSE LENGTH=429
          Length = 428

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/73 (75%), Positives = 64/73 (87%)

Query: 5   GEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERVSASG 64
           GE SGTT T V+I+G+T+TV SVGDSRCILDTQGG V LLTVD+ LE+N EERER++ASG
Sbjct: 128 GETSGTTVTFVIIDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERITASG 187

Query: 65  GEVGRLNLFGGQE 77
           GEVGRLN+FGG E
Sbjct: 188 GEVGRLNVFGGNE 200



>AT1G68410.1 | chr1:25650262-25652255 REVERSE LENGTH=437
          Length = 436

 Score =  103 bits (258), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 61/74 (82%)

Query: 5   GEVSGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERVSASG 64
           GE SGTTAT V+++G+TVTV  VGDSRCILDT+GG V  LTVD+ LE N EERERV+ASG
Sbjct: 133 GETSGTTATFVIVDGWTVTVACVGDSRCILDTKGGSVSNLTVDHRLEDNTEERERVTASG 192

Query: 65  GEVGRLNLFGGQEF 78
           GEVGRL++ GG E 
Sbjct: 193 GEVGRLSIVGGVEI 206



>AT1G47380.1 | chr1:17373004-17375305 REVERSE LENGTH=429
          Length = 428

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 52/71 (73%)

Query: 8   SGTTATLVVINGFTVTVESVGDSRCILDTQGGEVQLLTVDNCLEKNAEERERVSASGGEV 67
           SGTT T V++ G+ V+V SVGDSRCIL+   G V  L+ D+ LE N EER+RV+ASGGEV
Sbjct: 127 SGTTVTFVIVEGWVVSVASVGDSRCILEPAEGGVYYLSADHRLEINEEERDRVTASGGEV 186

Query: 68  GRLNLFGGQEF 78
           GRLN  GG E 
Sbjct: 187 GRLNTGGGTEI 197



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,572,137
Number of extensions: 51899
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 3
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)