BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0376900 Os10g0376900|AK058809
(328 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0376900 Basic helix-loop-helix dimerisation region bHL... 426 e-119
Os03g0188400 Basic helix-loop-helix dimerisation region bHL... 212 3e-55
Os09g0468700 Basic helix-loop-helix dimerisation region bHL... 179 3e-45
Os08g0483900 Basic helix-loop-helix dimerisation region bHL... 129 4e-30
Os05g0586300 119 4e-27
Os03g0122100 117 1e-26
Os02g0257500 100 3e-21
Os06g0526100 Basic helix-loop-helix dimerisation region bHL... 97 1e-20
Os05g0597000 95 9e-20
Os02g0759000 Conserved hypothetical protein 82 5e-16
>Os10g0376900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 328
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/328 (69%), Positives = 229/328 (69%)
Query: 1 MALEAVVYSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSWDDPGLFAAEASLDVIQGV 60
MALEAVVYSH GGSWDDPGLFAAEASLDVIQGV
Sbjct: 1 MALEAVVYSHGGHFGGYGGGLMGGAPAAPWDVFAAAGGGGSWDDPGLFAAEASLDVIQGV 60
Query: 61 DEWEVDQDQHASSSSXXXXXXXXXXXXXXXXXXXXXXXXXXNREEIESQRMTHIAVERNR 120
DEWEVDQDQHASSSS NREEIESQRMTHIAVERNR
Sbjct: 61 DEWEVDQDQHASSSSKVAARPPVKAAAAAGKRKRRRAKAAKNREEIESQRMTHIAVERNR 120
Query: 121 RRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEARRTIKDHIDGGA 180
RRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEARRTIKDHIDGGA
Sbjct: 121 RRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEARRTIKDHIDGGA 180
Query: 181 GEXXXXXXXXXXXXQYSTATSGHGGGGDAHSRIVVKPXXXXXXXXXXXXXXXXXXXXXSM 240
GE QYSTATSGHGGGGDAHSRIVVKP SM
Sbjct: 181 GESPSPFAGFFAFPQYSTATSGHGGGGDAHSRIVVKPAETTTTAAGGGAGAAIADIEASM 240
Query: 241 VEGHASVKVQARRRPRQLLKLVAXXXXXXXXXXXXNVTTVAAMAMYSFSLKVEDGCKLGS 300
VEGHASVKVQARRRPRQLLKLVA NVTTVAAMAMYSFSLKVEDGCKLGS
Sbjct: 241 VEGHASVKVQARRRPRQLLKLVAGLHQLGLTTLHLNVTTVAAMAMYSFSLKVEDGCKLGS 300
Query: 301 VEEIATAVHEILERMQEEQAFADAKTSL 328
VEEIATAVHEILERMQEEQAFADAKTSL
Sbjct: 301 VEEIATAVHEILERMQEEQAFADAKTSL 328
>Os03g0188400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 329
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/269 (47%), Positives = 154/269 (57%), Gaps = 5/269 (1%)
Query: 57 IQGVDEWEV-DQDQHASSSSXXXXXXXXXXXXXXXXXXXXXXXXXXNREEIESQRMTHIA 115
+ VDEWEV +D +S+ N+EEIE QRMTHIA
Sbjct: 56 VASVDEWEVASKDNSDASTEGKAAAAERAEPVAAGRRKRRRTKVVKNKEEIECQRMTHIA 115
Query: 116 VERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEARRTIKDH 175
VERNRRRQMNEYLAVLRSLMP SY+QRGDQASIVGGAINYV+ELEQLLQ+LE ++++K+
Sbjct: 116 VERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYVKELEQLLQSLEVQKSLKNR 175
Query: 176 IDGGAGEXXXXXXXXXXXXQYSTA----TSGHGGGGDAHSRIVVKPXXXXXXXXXXXXXX 231
QYST+ S G + S V
Sbjct: 176 SGAMDAAGDSPFAGFFSFPQYSTSPRTGCSAAASAGSSGSASSVVMDDTAGSAESGRQSA 235
Query: 232 XXXXXXXSMVEGHASVKVQARRRPRQLLKLVAXXXXXXXXXXXXNVTTVAAMAMYSFSLK 291
+MVEGHAS+KV ARRRP+QLLKLV NVTTV AM +YSFSLK
Sbjct: 236 AIADIEVTMVEGHASLKVLARRRPKQLLKLVVGLQQLRIPPLHLNVTTVDAMVLYSFSLK 295
Query: 292 VEDGCKLGSVEEIATAVHEILERMQEEQA 320
VED KLGSVE+IATAVH+IL +Q+++A
Sbjct: 296 VEDDSKLGSVEDIATAVHQILGSIQQQEA 324
>Os09g0468700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 351
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 144/238 (60%), Gaps = 30/238 (12%)
Query: 102 NREEIESQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQ 161
N+EE+ESQRMTHIAVERNRR+QMNEYLAVLRSLMPPSYAQRGDQASIVGGAIN+V+ELEQ
Sbjct: 125 NKEEVESQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINFVKELEQ 184
Query: 162 LLQTLEARRTIKDHIDGGAGEXXXXXXXXXXXXQYSTATSGH----------------GG 205
LLQ+LEAR++ + A QYS + + GG
Sbjct: 185 LLQSLEARKSSRQCAAHDAAAAAAPFASFFTFPQYSMSAAAAAAPVAPVVNELHGRDDGG 244
Query: 206 GGDAHSRIV-VKPXXXXXXXXXXXXXXXXXXXXXSMVEGHASVKVQARRRPRQLLKLVAX 264
G A + KP +MVE HA+++V +RRRPRQLL+LV
Sbjct: 245 AGTAEAEASGSKP-------------SAVADVEVTMVESHANLRVLSRRRPRQLLRLVVA 291
Query: 265 XXXXXXXXXXXNVTTVAAMAMYSFSLKVEDGCKLGSVEEIATAVHEILERMQEEQAFA 322
N+T+ M +YSFSLKVED C+L SV+EIATA H+I+E++QEEQ +
Sbjct: 292 LQGHRLTVLHLNMTSAGHMVLYSFSLKVEDDCQLTSVDEIATAAHQIIEKIQEEQGCS 349
>Os08g0483900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 363
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/67 (88%), Positives = 65/67 (97%)
Query: 102 NREEIESQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQ 161
NREE+ESQRMTHIAVERNRR+QMNEYLAVLRSLMP SY QRGDQASI+GGAINYV+E+EQ
Sbjct: 131 NREEVESQRMTHIAVERNRRKQMNEYLAVLRSLMPASYVQRGDQASIIGGAINYVKEMEQ 190
Query: 162 LLQTLEA 168
LLQ+LEA
Sbjct: 191 LLQSLEA 197
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 239 SMVEGHASVKVQARRRPRQLLKLVAXXXXXXXXXXXXNVTTVAAMAMYSFSLKVEDGCKL 298
+MVE HA++KV +RRRPRQLL++VA NV + MA+YS SLKVE+ C+L
Sbjct: 274 TMVESHANLKVLSRRRPRQLLRMVAGLQHHRLAVLHLNVASAGHMALYSLSLKVEEDCQL 333
Query: 299 GSVEEIATAVHEILERM 315
SV++IA AVH I+E +
Sbjct: 334 TSVDDIAAAVHGIVETI 350
>Os05g0586300
Length = 492
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 62/67 (92%)
Query: 104 EEIESQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLL 163
EE+ESQRMTHIAVERNRRRQMNEYL VLRSLMP SY QRGDQASI+GGAI ++RELEQL+
Sbjct: 251 EEVESQRMTHIAVERNRRRQMNEYLRVLRSLMPGSYVQRGDQASIIGGAIEFIRELEQLI 310
Query: 164 QTLEARR 170
Q LE+++
Sbjct: 311 QCLESQK 317
>Os03g0122100
Length = 301
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 104 EEIESQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLL 163
EE E+QRMTHIAVERNRRR MN++LA LRSL+P +Y RGDQA++VGGAI+YV++LEQ L
Sbjct: 110 EEAENQRMTHIAVERNRRRLMNDHLASLRSLIPSNYIPRGDQATVVGGAIDYVKQLEQQL 169
Query: 164 QTLEARRTIKDHIDGGAGEXXXXXXXXXXXXQYSTATSGHGGGGDAHSRIVVKPXXXXXX 223
L+A + + A QY++ + GG G
Sbjct: 170 VALQAAAAERSGVGVVAAAATAASDGVFVSPQYTSYSEARGGSG---------------- 213
Query: 224 XXXXXXXXXXXXXXXSMVEGHASVKVQARRRPRQLLKLVAXXXXXXXXXXXXNVTTVAAM 283
+ V GH V+V RR +L++ VA VT+V
Sbjct: 214 ---------VDVEATAAVGGHVRVRVAGRRWTGRLVRAVAAMEDLRLTVLHLAVTSVGHD 264
Query: 284 A-MYSFSLKVEDGCKLGSVEEIATAVHEIL 312
A +Y F+LK+E+GC++ + +E+AT VH+I
Sbjct: 265 AVVYCFNLKMEEGCEMATADEVATVVHQIF 294
>Os02g0257500
Length = 415
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 59/68 (86%)
Query: 110 RMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEAR 169
+M+HI VERNRR+QMNE+LAVLRSLMP Y +RGDQASI+GG ++Y++EL+Q+L++LEA+
Sbjct: 131 KMSHITVERNRRKQMNEHLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLRSLEAK 190
Query: 170 RTIKDHID 177
+ K + D
Sbjct: 191 KNRKAYAD 198
>Os06g0526100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 396
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%)
Query: 108 SQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLE 167
+ + HIAVERNRR+QMNE LAVLRSLMP Y +RGDQASI+GG ++Y++EL+Q+L +LE
Sbjct: 134 TPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLE 193
Query: 168 ARRTIKDHID 177
A++ K + D
Sbjct: 194 AKKQRKVYTD 203
>Os05g0597000
Length = 227
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 54/60 (90%)
Query: 111 MTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEARR 170
M+HIAVERNRRRQMN++L VLRSL P Y +RGDQASI+GGAI++++EL+ LLQ+LEA++
Sbjct: 1 MSHIAVERNRRRQMNDHLKVLRSLTPAFYIKRGDQASIIGGAIDFIKELQTLLQSLEAQK 60
>Os02g0759000 Conserved hypothetical protein
Length = 152
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 24/168 (14%)
Query: 156 VRELEQLLQTLEARRTIKDHIDGGAGEXXXXXXXXXXXXQYSTATSGHGGGG----DAHS 211
V+ELEQLLQ+LEA++ +H QYST + G D
Sbjct: 1 VKELEQLLQSLEAQKRRAEH-----APPAPPFAGFFTFPQYSTTVGDNNAAGSGAADGEG 55
Query: 212 RIVVKPXXXXXXXXXXXXXXXXXXXXXSMVEGHASVKVQARRRPRQLLKLVAXXXXXXXX 271
+P +M E HA+V+V A RRPRQLL++V
Sbjct: 56 GCGARPGAADIEV--------------AMAESHANVRVLAPRRPRQLLRMVVALQCLGLT 101
Query: 272 XXXXNVTTVAA-MAMYSFSLKVEDGCKLGSVEEIATAVHEILERMQEE 318
NVTT A +A+YSFSLK+ED C+L SV+EIA AV++++ ++ E
Sbjct: 102 VLHLNVTTTADHLALYSFSLKMEDECRLSSVDEIAGAVNQMVTKIAGE 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,551,971
Number of extensions: 231875
Number of successful extensions: 646
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 12
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)