FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0188400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.69 (0.599) R2 : -91.8
β1 : -4.14 (2.21) R2dD : 2.19 R2D : -0.0908
β2 : 1.25 (1.56) R2dC : 0.18 R2C : 0.0602
β3 : 20.8 (1.85) R2dE : -30.8 R2E : -26.6
β4 : -3.24 (7.17) R2dD*C : 0.0892 R2D*C : -0.0206
β5 : 107 (6.16) R2dD*E : -64.9 R2D*E : -63.5
γ1 : -0.882 (1.3) R2dN8 : -0.285 R2N8 : -0.157
σ : 0.831
deviance : 312.89
__
_____
C
peak time of C : 5.86
E
wheather : wind
threshold : 4
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.89 0.831 3.69 -4.14 1.25 20.8 -3.24 107 -0.882 5.86 4 7 23 1
363.28 0.895 4.14 -2.26 1.24 -0.375 -3.1 -- -0.838 5.26 4 7 23 1
383.68 0.919 4.14 -2.32 1.23 -0.478 -- 0.917 -0.849 4.86 4 7 23 1
383.23 0.918 4.13 -2.27 1.26 -0.522 -- -- -0.803 4.7 4.103 4 23.2 2.47
462.54 1.01 4.14 -2.27 -- -0.283 -- 0.865 -0.793 -- 4 7 23 1
367.96 0.899 4.12 -2.25 1.22 -- -3.17 -- -0.79 5.53 -- -- -- --
392.62 0.928 4.12 -2.27 1.2 -- -- -- -0.777 5.37 -- -- -- --
464.13 1.01 4.14 -2.22 -- -0.275 -- -- -0.76 -- 4.103 4 23.2 2.47
506.92 1.05 4.07 -- 1.42 -0.702 -- -- -0.537 4.55 2.406 3 23.3 4.7
467.61 1.01 4.13 -2.23 -- -- -- -- -0.747 -- -- -- -- --
528.07 1.07 4.06 -- 1.16 -- -- -- -0.524 5.45 -- -- -- --
528.29 1.07 4.09 -- -- 0.966 -- -- -0.609 -- 29.6 690 20.5 5.92
598.35 1.14 4.08 -- -- -- -- -- -0.5 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.89 wind 7.0 1440 < th dose independent rect. 23 1
3 322.58 precipitation 0.1 30 < th dose independent rect. 23 23
4 322.58 precipitation 0.1 30 < th dose dependent rect. 23 23
5 323.96 radiation 20.0 14400 < th dose dependent rect. 23 1
8 324.55 wind 1.0 14400 < th dose independent rect. 2 1
9 324.70 wind 1.0 14400 > th dose independent rect. 2 1
10 325.54 wind 9.0 30 < th dose independent rect. 23 23
16 327.52 temperature 15.0 30 > th dose independent rect. 23 23
18 327.66 temperature 10.0 1440 > th dose independent rect. 23 1
21 327.66 temperature 30.0 1440 < th dose independent rect. 23 1
25 327.66 humidity 50.0 1440 > th dose independent rect. 23 1
35 327.66 atmosphere 995.0 1440 > th dose independent rect. 23 1
36 327.66 radiation 1.0 1440 < th dose independent rect. 23 1
56 327.66 temperature 10.0 1440 > th dose independent rect. 24 23
64 327.71 atmosphere 1005.0 30 > th dose dependent rect. 22 1
65 327.86 atmosphere 1005.0 30 > th dose independent rect. 22 1
66 327.88 temperature 25.0 30 > th dose independent rect. 22 1
68 327.98 temperature 20.0 30 > th dose dependent rect. 22 1
70 328.01 humidity 80.0 30 > th dose independent rect. 22 1
72 328.04 wind 3.0 30 < th dose independent rect. 22 1
75 328.16 wind 1.0 30 > th dose independent rect. 22 1
78 328.23 humidity 90.0 30 < th dose independent rect. 22 1
79 328.27 precipitation 0.1 30 < th dose independent rect. 22 1
80 328.27 precipitation 0.1 30 < th dose dependent rect. 22 1
81 328.35 humidity 50.0 30 > th dose dependent rect. 22 1
84 328.39 wind 7.0 30 < th dose independent rect. 22 1
86 328.39 temperature 10.0 30 > th dose independent rect. 22 1
88 328.39 temperature 30.0 30 < th dose independent rect. 22 1
89 328.39 humidity 50.0 30 > th dose independent rect. 22 1
93 328.39 atmosphere 1010.0 30 < th dose independent rect. 22 1
95 328.39 radiation 1.0 30 < th dose independent rect. 22 1
101 328.39 radiation 1.0 30 < th dose dependent rect. 22 1
106 328.40 wind 9.0 30 < th dose dependent rect. 22 1
113 328.61 wind 1.0 30 > th dose dependent rect. 22 1
117 328.99 humidity 90.0 30 < th dose dependent rect. 22 1
123 329.35 temperature 30.0 30 < th dose dependent rect. 22 1
124 329.44 atmosphere 1015.0 30 < th dose dependent rect. 22 1
126 329.68 temperature 20.0 14400 < th dose dependent rect. 18 2
173 331.62 humidity 90.0 14400 < th dose independent rect. 4 2
175 331.70 wind 1.0 14400 < th dose dependent rect. 2 1
177 331.81 wind 9.0 4320 < th dose independent rect. 18 3
181 332.09 temperature 20.0 14400 < th dose independent rect. 14 5
182 332.14 temperature 20.0 14400 < th dose dependent rect. 14 7
186 332.15 wind 3.0 720 > th dose dependent rect. 21 2
194 332.63 wind 5.0 4320 > th dose independent rect. 21 2
202 332.91 wind 5.0 4320 < th dose independent rect. 21 2
203 332.95 temperature 15.0 14400 < th dose independent rect. 2 1
210 333.27 temperature 15.0 14400 > th dose independent rect. 2 1
213 333.38 temperature 20.0 14400 > th dose independent rect. 13 6
217 333.50 temperature 20.0 14400 < th dose dependent sin 20 NA
227 333.76 temperature 20.0 14400 < th dose dependent rect. 6 15
236 333.93 temperature 15.0 14400 > th dose independent rect. 24 11
245 334.08 temperature 15.0 14400 > th dose independent rect. 24 5
248 334.11 wind 1.0 43200 > th dose independent rect. 17 13
264 334.25 wind 3.0 4320 > th dose dependent rect. 21 3
276 334.33 wind 9.0 4320 > th dose independent rect. 18 3
285 334.38 temperature 15.0 14400 < th dose independent rect. 1 9
298 334.45 temperature 15.0 14400 > th dose independent sin 6 NA
308 334.49 temperature 15.0 14400 < th dose independent rect. 24 5
312 334.52 temperature 15.0 14400 > th dose independent rect. 7 3
315 334.53 radiation 1.0 14400 > th dose independent rect. 9 1
317 334.54 temperature 15.0 14400 > th dose independent rect. 5 6
369 334.73 wind 1.0 14400 < th dose dependent rect. 2 4
382 334.81 radiation 1.0 14400 < th dose independent rect. 9 1
405 334.93 temperature 15.0 14400 > th dose independent rect. 4 8
432 335.05 wind 1.0 43200 < th dose independent rect. 17 13
461 335.18 wind 1.0 43200 < th dose independent rect. 22 7
480 335.29 wind 9.0 4320 < th dose independent rect. 17 8
516 335.42 temperature 20.0 14400 < th dose dependent rect. 11 4
517 335.43 wind 5.0 720 > th dose independent rect. 21 2
527 335.46 temperature 15.0 14400 < th dose independent rect. 4 6
551 335.56 humidity 90.0 14400 < th dose independent rect. 1 6
580 335.66 temperature 15.0 14400 < th dose independent sin 7 NA
596 335.71 wind 9.0 4320 > th dose independent rect. 18 6
600 335.72 temperature 15.0 14400 < th dose independent rect. 9 1
614 335.76 humidity 90.0 14400 < th dose independent rect. 3 4
662 335.94 radiation 40.0 43200 > th dose independent rect. 7 1
682 335.94 temperature 20.0 14400 < th dose dependent rect. 13 1
683 335.94 radiation 40.0 43200 > th dose dependent rect. 7 1
717 336.00 wind 9.0 4320 > th dose dependent rect. 18 6
745 336.10 temperature 20.0 14400 > th dose independent rect. 14 1
755 336.14 wind 1.0 43200 < th dose independent rect. 18 11
772 336.20 temperature 15.0 14400 > th dose independent no NA NA
792 336.25 temperature 15.0 14400 > th dose independent rect. 9 23
796 336.27 temperature 15.0 14400 < th dose independent rect. 5 1
797 336.27 temperature 15.0 14400 > th dose independent rect. 7 23
814 336.35 temperature 15.0 14400 > th dose independent rect. 2 23
827 336.39 temperature 15.0 14400 > th dose independent rect. 4 23
836 336.42 temperature 20.0 14400 < th dose independent rect. 14 1
867 336.53 wind 1.0 43200 < th dose independent rect. 20 9
872 336.55 radiation 40.0 43200 < th dose independent rect. 16 10
876 336.56 wind 3.0 720 > th dose dependent rect. 16 17
906 336.70 wind 1.0 43200 < th dose dependent rect. 17 15
911 336.71 wind 9.0 4320 < th dose dependent rect. 22 1
917 336.74 wind 3.0 4320 > th dose independent rect. 23 1
926 336.76 wind 9.0 4320 > th dose dependent rect. 18 4
945 336.85 atmosphere 1005.0 30 > th dose dependent rect. 14 9
954 336.90 radiation 40.0 43200 < th dose independent rect. 16 12
975 336.98 wind 1.0 43200 > th dose independent rect. 22 7
977 336.99 humidity 90.0 14400 > th dose independent rect. 5 1
982 336.99 radiation 40.0 43200 < th dose dependent rect. 24 5
988 337.02 wind 5.0 720 < th dose independent rect. 15 15