BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0188400 Os03g0188400|AK107555
(329 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0188400 Basic helix-loop-helix dimerisation region bHL... 479 e-135
Os10g0376900 Basic helix-loop-helix dimerisation region bHL... 209 2e-54
Os08g0483900 Basic helix-loop-helix dimerisation region bHL... 188 5e-48
Os09g0468700 Basic helix-loop-helix dimerisation region bHL... 172 2e-43
Os03g0122100 107 9e-24
Os05g0597000 100 3e-21
Os05g0586300 97 1e-20
Os02g0759000 Conserved hypothetical protein 91 1e-18
Os02g0257500 79 4e-15
Os06g0526100 Basic helix-loop-helix dimerisation region bHL... 77 2e-14
>Os03g0188400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 329
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/329 (73%), Positives = 243/329 (73%)
Query: 1 MALEAVVFPQGHFGYGCGRDSPAYGMPWCDVLXXXXXXXXXXEFYGVDEWDDQLQVASVD 60
MALEAVVFPQGHFGYGCGRDSPAYGMPWCDVL EFYGVDEWDDQLQVASVD
Sbjct: 1 MALEAVVFPQGHFGYGCGRDSPAYGMPWCDVLAAAGGGGGFGEFYGVDEWDDQLQVASVD 60
Query: 61 EWEVASKDNSDXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXEEIECQRMTHIAVERNR 120
EWEVASKDNSD G EEIECQRMTHIAVERNR
Sbjct: 61 EWEVASKDNSDASTEGKAAAAERAEPVAAGRRKRRRTKVVKNKEEIECQRMTHIAVERNR 120
Query: 121 RRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYXXXXXXXXXXXXXXXXXXNRSGAMD 180
RRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINY NRSGAMD
Sbjct: 121 RRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYVKELEQLLQSLEVQKSLKNRSGAMD 180
Query: 181 AAGDSPFAGFFSFPQYSTSPRTGCXXXXXXXXXXXXXXVVMDDTAGSAESGRQSAAIADI 240
AAGDSPFAGFFSFPQYSTSPRTGC VVMDDTAGSAESGRQSAAIADI
Sbjct: 181 AAGDSPFAGFFSFPQYSTSPRTGCSAAASAGSSGSASSVVMDDTAGSAESGRQSAAIADI 240
Query: 241 EVTMVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHLNVTTVDAMVLYSFSLKVEDDS 300
EVTMVEGHASLKVLARRRP RIPPLHLNVTTVDAMVLYSFSLKVEDDS
Sbjct: 241 EVTMVEGHASLKVLARRRPKQLLKLVVGLQQLRIPPLHLNVTTVDAMVLYSFSLKVEDDS 300
Query: 301 KLGSVEDIATAVHQILGSIQQQEAVLSIS 329
KLGSVEDIATAVHQILGSIQQQEAVLSIS
Sbjct: 301 KLGSVEDIATAVHQILGSIQQQEAVLSIS 329
>Os10g0376900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 328
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 138/221 (62%), Gaps = 4/221 (1%)
Query: 104 EEIECQRMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYXXXXXXXX 163
EEIE QRMTHIAVERNRRRQMNEYLAVLRSLMP SY+QRGDQASIVGGAINY
Sbjct: 104 EEIESQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLL 163
Query: 164 XXXXXXXXXXNRSGAMDAAGDSPFAGFFSFPQYSTSPRTGCXXXXXXXXXXXXXXVVMDD 223
+ SPFAGFF+FPQYST+ V +
Sbjct: 164 QTLEARRTIKDHIDGGAGESPSPFAGFFAFPQYSTA----TSGHGGGGDAHSRIVVKPAE 219
Query: 224 TAGSAESGRQSAAIADIEVTMVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHLNVTT 283
T +A G AAIADIE +MVEGHAS+KV ARRRP + LHLNVTT
Sbjct: 220 TTTTAAGGGAGAAIADIEASMVEGHASVKVQARRRPRQLLKLVAGLHQLGLTTLHLNVTT 279
Query: 284 VDAMVLYSFSLKVEDDSKLGSVEDIATAVHQILGSIQQQEA 324
V AM +YSFSLKVED KLGSVE+IATAVH+IL +Q+++A
Sbjct: 280 VAAMAMYSFSLKVEDGCKLGSVEEIATAVHEILERMQEEQA 320
>Os08g0483900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 363
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 130/220 (59%), Gaps = 6/220 (2%)
Query: 104 EEIECQRMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYXXXXXXXX 163
EE+E QRMTHIAVERNRR+QMNEYLAVLRSLMPASY QRGDQASI+GGAINY
Sbjct: 133 EEVESQRMTHIAVERNRRKQMNEYLAVLRSLMPASYVQRGDQASIIGGAINYVKEMEQLL 192
Query: 164 XXXXXXXXXXNRSGAMDAAGDSPFAGFFSFPQYSTS----PRTGCXXXXXXXXXXXXXXV 219
AA PFAGFF+FPQYS S T
Sbjct: 193 QSLEAHRHARRARTDAAAA--LPFAGFFTFPQYSMSAVPTTTTTTVAAAATENGNAVAGA 250
Query: 220 VMDDTAGSAESGRQSAAIADIEVTMVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHL 279
D A + SG + +++ADIEVTMVE HA+LKVL+RRRP R+ LHL
Sbjct: 251 GAGDDADADVSGSKPSSVADIEVTMVESHANLKVLSRRRPRQLLRMVAGLQHHRLAVLHL 310
Query: 280 NVTTVDAMVLYSFSLKVEDDSKLGSVEDIATAVHQILGSI 319
NV + M LYS SLKVE+D +L SV+DIA AVH I+ +I
Sbjct: 311 NVASAGHMALYSLSLKVEEDCQLTSVDDIAAAVHGIVETI 350
>Os09g0468700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 351
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/224 (51%), Positives = 140/224 (62%), Gaps = 6/224 (2%)
Query: 104 EEIECQRMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYXXXXXXXX 163
EE+E QRMTHIAVERNRR+QMNEYLAVLRSLMP SY+QRGDQASIVGGAIN+
Sbjct: 127 EEVESQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINFVKELEQLL 186
Query: 164 XXXXXXXXXXNRSGAMDAAGDSPFAGFFSFPQYSTSPRTGCXXXXXXXXXXXXXXVVMDD 223
+ AA +PFA FF+FPQYS S D
Sbjct: 187 QSLEARKSSRQCAAHDAAAAAAPFASFFTFPQYSMSAAAAAAPVAPVVNELHGRD---DG 243
Query: 224 TAGSAE---SGRQSAAIADIEVTMVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHLN 280
AG+AE SG + +A+AD+EVTMVE HA+L+VL+RRRP R+ LHLN
Sbjct: 244 GAGTAEAEASGSKPSAVADVEVTMVESHANLRVLSRRRPRQLLRLVVALQGHRLTVLHLN 303
Query: 281 VTTVDAMVLYSFSLKVEDDSKLGSVEDIATAVHQILGSIQQQEA 324
+T+ MVLYSFSLKVEDD +L SV++IATA HQI+ IQ+++
Sbjct: 304 MTSAGHMVLYSFSLKVEDDCQLTSVDEIATAAHQIIEKIQEEQG 347
>Os03g0122100
Length = 301
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 107/217 (49%), Gaps = 34/217 (15%)
Query: 104 EEIECQRMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYXXXXXXXX 163
EE E QRMTHIAVERNRRR MN++LA LRSL+P++Y RGDQA++VGGAI+Y
Sbjct: 110 EEAENQRMTHIAVERNRRRLMNDHLASLRSLIPSNYIPRGDQATVVGGAIDYVKQLEQQL 169
Query: 164 XXXXXXXXXXNRSGAMDAAGDSPFAGFFSFPQYSTSPRTGCXXXXXXXXXXXXXXVVMDD 223
+ G + AA + G F PQY+
Sbjct: 170 VALQAAAAERSGVGVVAAAATAASDGVFVSPQYT-------------------------- 203
Query: 224 TAGSAESGRQSAAIADIEVT-MVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHLNVT 282
S R + + D+E T V GH ++V RR R+ LHL VT
Sbjct: 204 ---SYSEARGGSGV-DVEATAAVGGHVRVRVAGRRWTGRLVRAVAAMEDLRLTVLHLAVT 259
Query: 283 TV--DAMVLYSFSLKVEDDSKLGSVEDIATAVHQILG 317
+V DA V+Y F+LK+E+ ++ + +++AT VHQI
Sbjct: 260 SVGHDA-VVYCFNLKMEEGCEMATADEVATVVHQIFA 295
>Os05g0597000
Length = 227
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 103/214 (48%), Gaps = 13/214 (6%)
Query: 111 MTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYXXXXXXXXXXXXXXX 170
M+HIAVERNRRRQMN++L VLRSL PA Y +RGDQASI+GGAI++
Sbjct: 1 MSHIAVERNRRRQMNDHLKVLRSLTPAFYIKRGDQASIIGGAIDFIKELQTLLQSLEAQK 60
Query: 171 XXXNRSGAMDAAGDSPFAGFFSFPQYSTSPR---TGCXXXXXXXXXXXXXXVV--MDDTA 225
+ A + S A P + SPR T C + D+
Sbjct: 61 KRRQQPQAHLISPASISASGGGSPSPTPSPRSLITSCSPTAAAGSSAGSSSSISPKDENK 120
Query: 226 GSAESGRQSAA-----IADIEVTMVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHLN 280
+ + AA +AD+E + + L+ L+RR P + LHLN
Sbjct: 121 QQLQLVAELAACCNSPMADVEARISGANVLLRTLSRRAPPVRIIALLESLHLEV--LHLN 178
Query: 281 VTTVDAMVLYSFSLKVEDDSKLGSVEDIATAVHQ 314
+TT+D VLYSF LK+ D L SV+D+A VHQ
Sbjct: 179 ITTMDDTVLYSFVLKIGLDCHL-SVDDLAMEVHQ 211
>Os05g0586300
Length = 492
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 47/52 (90%)
Query: 104 EEIECQRMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINY 155
EE+E QRMTHIAVERNRRRQMNEYL VLRSLMP SY QRGDQASI+GGAI +
Sbjct: 251 EEVESQRMTHIAVERNRRRQMNEYLRVLRSLMPGSYVQRGDQASIIGGAIEF 302
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 235 AAIADIEVTMVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHLNVTTVDAMVLYSFSL 294
+ +ADIEV +V A +K+L+RRRP + LH N+TT+D VLYSF++
Sbjct: 403 SCVADIEVRVVGVDAMIKILSRRRPGQLIKTVAALEEMHMSILHTNITTIDQTVLYSFNV 462
Query: 295 KVEDDSKLGSVEDIATAVHQILGSI 319
K+ D++ S EDIA AVHQIL I
Sbjct: 463 KIAGDARF-SAEDIAGAVHQILSFI 486
>Os02g0759000 Conserved hypothetical protein
Length = 152
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 78/141 (55%), Gaps = 27/141 (19%)
Query: 186 PFAGFFSFPQYSTSPRTGCXXXXXXXXXXXXXXVVMDDTAGSAES------GRQSAAIAD 239
PFAGFF+FPQYST+ V ++ AGS + G + A AD
Sbjct: 26 PFAGFFTFPQYSTT-------------------VGDNNAAGSGAADGEGGCGARPGA-AD 65
Query: 240 IEVTMVEGHASLKVLARRRPXXXXXXXXXXXXXRIPPLHLNVTTV-DAMVLYSFSLKVED 298
IEV M E HA+++VLA RRP + LHLNVTT D + LYSFSLK+ED
Sbjct: 66 IEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKMED 125
Query: 299 DSKLGSVEDIATAVHQILGSI 319
+ +L SV++IA AV+Q++ I
Sbjct: 126 ECRLSSVDEIAGAVNQMVTKI 146
>Os02g0257500
Length = 415
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 41/46 (89%)
Query: 110 RMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINY 155
+M+HI VERNRR+QMNE+LAVLRSLMP Y +RGDQASI+GG ++Y
Sbjct: 131 KMSHITVERNRRKQMNEHLAVLRSLMPCFYVKRGDQASIIGGVVDY 176
>Os06g0526100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 396
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 110 RMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINY 155
+ HIAVERNRR+QMNE LAVLRSLMP Y +RGDQASI+GG ++Y
Sbjct: 136 KTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDY 181
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,883,962
Number of extensions: 221346
Number of successful extensions: 533
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 11
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)