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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0376900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0669) R2 : 0.391
β1 : -0.945 (0.244) R2dD : 0.0215 R2D : 0.0325
β2 : 1.19 (0.163) R2dC : 0.0713 R2C : 0.0778
β3 : 2.19 (0.207) R2dE : 0.169 R2E : 0.184
β4 : -2.94 (0.675) R2dD*C : 0.0257 R2D*C : 0.0247
β5 : -4.76 (0.746) R2dD*E : 0.0574 R2D*E : 0.0887
γ1 : 0.453 (0.149) R2dN8 : 0.0188 R2N8 : -0.0138
σ : 1.24
deviance : 691.38
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C
peak time of C : 2.95
E
wheather : radiation
threshold : 16.3
memory length : 1307
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 1.96

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
691.38 1.24 3.41 -0.945 1.19 2.19 -2.94 -4.76 0.453 2.95 16.3 1307 11.2 1.96
750.61 1.28 3.41 -1.12 1.16 2.33 -3.18 -- 0.387 2.83 16.36 1281 11.3 1.97
718.06 1.25 3.39 -0.852 1.19 2.18 -- -4.97 0.481 2.44 16.16 1304 11.1 2.01
787.75 1.31 3.42 -1.05 1.19 2.33 -- -- 0.371 2.61 16.16 1284 11.3 1.92
792.99 1.31 3.39 -0.798 -- 2.31 -- -5.08 0.51 -- 16.33 1283 11.3 1.98
938.45 1.44 3.59 -1.52 1.35 -- -3.33 -- -0.189 2.27 -- -- -- --
978.16 1.46 3.58 -1.42 1.34 -- -- -- -0.168 1.84 -- -- -- --
863.13 1.37 3.43 -1.02 -- 2.48 -- -- 0.413 -- 16.38 1266 11.4 1.9
815.84 1.33 3.43 -- 1.13 2.47 -- -- 0.485 2.52 15.87 1283 11.2 2.03
1086.56 1.54 3.57 -1.37 -- -- -- -- -0.137 -- -- -- -- --
1031.63 1.5 3.54 -- 1.31 -- -- -- -0.00923 1.81 -- -- -- --
889.86 1.39 3.42 -- -- 2.58 -- -- 0.522 -- 16.34 1266 11.4 1.95
1136.02 1.57 3.53 -- -- -- -- -- 0.0147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 729.35 radiation 20 1440 < th dose independent rect. 11 2
2 735.56 radiation 20 1440 < th dose dependent rect. 11 2
3 735.66 radiation 10 1440 < th dose dependent rect. 8 7
11 747.65 radiation 10 1440 < th dose independent rect. 13 2
13 748.84 radiation 20 1440 < th dose dependent rect. 11 4
15 749.41 radiation 20 1440 < th dose independent rect. 11 5
25 752.31 radiation 10 1440 < th dose dependent rect. 7 17
26 752.40 radiation 10 1440 < th dose dependent rect. 7 14
32 752.60 radiation 10 1440 < th dose dependent rect. 7 20
42 752.92 radiation 10 1440 < th dose dependent sin 23 NA
48 753.27 radiation 10 1440 < th dose independent rect. 13 4
56 753.52 wind 9 4320 > th dose independent rect. 17 1
69 754.81 wind 7 4320 > th dose dependent rect. 17 1
92 756.47 radiation 10 1440 > th dose independent rect. 17 22
93 756.55 radiation 10 1440 > th dose independent rect. 8 5
95 756.73 wind 9 4320 < th dose independent rect. 17 1
97 757.11 radiation 10 1440 > th dose independent rect. 7 8
100 757.76 radiation 20 1440 < th dose dependent rect. 11 22
128 759.32 wind 7 4320 > th dose independent rect. 17 4
145 760.24 radiation 20 1440 < th dose dependent rect. 2 14
148 760.34 radiation 20 1440 < th dose dependent rect. 17 23
151 760.45 radiation 20 1440 < th dose dependent rect. 20 20
154 760.54 radiation 20 1440 < th dose dependent rect. 23 17
178 761.27 radiation 20 1440 < th dose independent rect. 11 13
179 761.27 radiation 20 1440 < th dose independent rect. 11 19
180 761.31 radiation 20 1440 > th dose independent rect. 11 2
181 761.34 radiation 20 1440 < th dose independent rect. 11 10
192 761.50 radiation 20 1440 < th dose independent rect. 11 16
274 763.10 radiation 20 1440 < th dose dependent rect. 2 22
280 763.16 radiation 20 1440 < th dose dependent rect. 2 19
304 763.29 radiation 20 1440 < th dose dependent rect. 11 20
317 763.40 radiation 20 1440 < th dose dependent rect. 23 22
321 763.42 radiation 20 1440 < th dose dependent no NA NA
326 763.44 radiation 20 1440 < th dose dependent rect. 11 13
343 763.52 radiation 20 1440 < th dose dependent rect. 11 10
359 763.72 radiation 20 1440 < th dose dependent rect. 11 16
369 764.12 radiation 10 1440 > th dose independent sin 2 NA
395 765.24 radiation 10 1440 < th dose independent rect. 9 15
399 765.30 radiation 10 1440 < th dose independent rect. 9 12
402 765.34 radiation 20 1440 < th dose independent rect. 11 22
411 765.44 radiation 10 1440 < th dose independent rect. 9 18
480 767.19 radiation 1 1440 > th dose dependent rect. 11 2
501 767.52 radiation 10 1440 < th dose independent sin 19 NA
516 767.87 radiation 10 1440 > th dose independent rect. 11 23
594 769.20 radiation 20 1440 < th dose dependent rect. 14 23
687 770.07 radiation 10 1440 > th dose independent no NA NA
797 770.72 radiation 10 1440 > th dose independent rect. 14 23
970 772.42 radiation 1 1440 > th dose dependent rect. 11 4