FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0759000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.77 (0.0415) R2 : 0.832
β1 : -0.875 (0.165) R2dD : 0.014 R2D : -0.0228
β2 : 4.87 (0.105) R2dC : 0.825 R2C : 0.727
β3 : 1.51 (0.111) R2dE : 0.0785 R2E : -0.0382
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.78 (0.465) R2dD*E : 0.0179 R2D*E : -0.00814
γ1 : -1.02 (0.0938) R2dN8 : 0.0714 R2N8 : -0.0154
σ : 0.744
deviance : 255.35
__
_____
C
peak time of C : 6.63
E
wheather : radiation
threshold : 11.24
memory length : 1169
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.7
open length of G : 7.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.72 0.747 6.77 -0.853 4.8 1.4 1.45 -2.67 -1.05 6.51 12.87 1224 10.6 7.1
269.56 0.765 6.75 -0.466 4.86 1.37 1.83 -- -0.952 6.61 15.48 1166 11 7.09
255.35 0.744 6.77 -0.875 4.87 1.51 -- -2.78 -1.02 6.63 11.24 1169 10.7 7.6
275.98 0.774 6.73 -0.488 4.93 1.33 -- -- -0.874 6.59 11.41 1117 10.9 8.21
1126.61 1.57 6.76 -0.0626 -- -1.89 -- 0.126 -0.564 -- -97.52 1438 11.5 8.17
327.49 0.848 6.64 -0.164 4.76 -- 1.49 -- -0.5 6.07 -- -- -- --
332.86 0.854 6.64 -0.151 4.77 -- -- -- -0.506 6.05 -- -- -- --
593.44 1.13 6.82 0.763 -- -3.79 -- -- -0.331 -- -142.7 17643 11.5 8.2
280.54 0.78 6.72 -- 4.91 1.25 -- -- -0.839 6.57 16.18 1160 10.9 8.2
1511.4 1.82 6.72 -0.0131 -- -- -- -- -0.398 -- -- -- -- --
333.46 0.854 6.64 -- 4.77 -- -- -- -0.489 6.05 -- -- -- --
327.95 0.843 6.65 -- -- -4.58 -- -- -0.392 -- -172.5 19213 7.35 13.2
1511.4 1.81 6.72 -- -- -- -- -- -0.396 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.09 radiation 20 1440 < th dose dependent rect. 11 6
6 275.65 radiation 20 1440 < th dose dependent rect. 11 16
7 275.66 radiation 20 1440 < th dose dependent rect. 11 11
11 275.68 radiation 20 1440 < th dose dependent rect. 11 14
29 276.53 humidity 90 720 < th dose dependent rect. 17 8
33 277.04 radiation 10 1440 > th dose independent rect. 11 6
37 277.41 radiation 20 1440 < th dose dependent rect. 11 3
41 277.54 humidity 50 720 > th dose dependent rect. 16 9
74 277.86 radiation 10 1440 < th dose independent rect. 12 5
75 277.86 humidity 90 720 < th dose dependent rect. 19 2
100 278.05 radiation 20 1440 < th dose dependent sin 19 NA
112 278.35 humidity 90 720 < th dose dependent sin 14 NA
142 278.53 radiation 10 1440 > th dose independent sin 20 NA
148 278.65 humidity 90 720 < th dose dependent rect. 15 15
331 280.77 radiation 10 1440 > th dose independent rect. 10 3
401 281.22 radiation 10 1440 > th dose independent no NA NA
476 281.34 humidity 90 720 > th dose independent rect. 20 4
505 281.49 radiation 10 1440 < th dose independent rect. 11 16
507 281.51 radiation 10 1440 < th dose independent rect. 11 11
512 281.52 radiation 10 1440 < th dose independent rect. 11 14
523 281.61 radiation 20 1440 > th dose independent rect. 15 23
686 282.10 humidity 50 720 > th dose dependent rect. 15 17
886 283.04 radiation 1 1440 > th dose dependent rect. 11 6