BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0759000 Os02g0759000|AK107898
(152 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0759000 Conserved hypothetical protein 204 2e-53
Os08g0483900 Basic helix-loop-helix dimerisation region bHL... 103 6e-23
Os10g0376900 Basic helix-loop-helix dimerisation region bHL... 102 1e-22
Os03g0188400 Basic helix-loop-helix dimerisation region bHL... 97 5e-21
Os09g0468700 Basic helix-loop-helix dimerisation region bHL... 91 3e-19
Os05g0586300 69 2e-12
>Os02g0759000 Conserved hypothetical protein
Length = 152
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 105/138 (76%)
Query: 15 KRRAEHXXXXXXXXXXXXXXQYSTTVXXXXXXXXXXXXXXXXXXXRPGAADIEVAMAESH 74
KRRAEH QYSTTV RPGAADIEVAMAESH
Sbjct: 15 KRRAEHAPPAPPFAGFFTFPQYSTTVGDNNAAGSGAADGEGGCGARPGAADIEVAMAESH 74
Query: 75 ANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKMEDECRLSSVDE 134
ANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKMEDECRLSSVDE
Sbjct: 75 ANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKMEDECRLSSVDE 134
Query: 135 IAGAVNQMVTKIAGECIS 152
IAGAVNQMVTKIAGECIS
Sbjct: 135 IAGAVNQMVTKIAGECIS 152
>Os08g0483900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 363
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 64 ADIEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKM 123
ADIEV M ESHAN++VL+ RRPRQLLRMV LQ L VLHLNV +A H+ALYS SLK+
Sbjct: 269 ADIEVTMVESHANLKVLSRRRPRQLLRMVAGLQHHRLAVLHLNV-ASAGHMALYSLSLKV 327
Query: 124 EDECRLSSVDEIAGAVNQMVTKI 146
E++C+L+SVD+IA AV+ +V I
Sbjct: 328 EEDCQLTSVDDIAAAVHGIVETI 350
>Os10g0376900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 328
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 64 ADIEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKM 123
ADIE +M E HA+V+V A RRPRQLL++V L LGLT LHLNVTT A +A+YSFSLK+
Sbjct: 234 ADIEASMVEGHASVKVQARRRPRQLLKLVAGLHQLGLTTLHLNVTTVA-AMAMYSFSLKV 292
Query: 124 EDECRLSSVDEIAGAVNQMVTKIAGE 149
ED C+L SV+EIA AV++++ ++ E
Sbjct: 293 EDGCKLGSVEEIATAVHEILERMQEE 318
>Os03g0188400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 329
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 64 ADIEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKM 123
ADIEV M E HA+++VLA RRP+QLL++VV LQ L + LHLNVTT D + LYSFSLK+
Sbjct: 238 ADIEVTMVEGHASLKVLARRRPKQLLKLVVGLQQLRIPPLHLNVTTV-DAMVLYSFSLKV 296
Query: 124 EDECRLSSVDEIAGAVNQMVTKI 146
ED+ +L SV++IA AV+Q++ I
Sbjct: 297 EDDSKLGSVEDIATAVHQILGSI 319
>Os09g0468700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 351
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 75/91 (82%), Gaps = 2/91 (2%)
Query: 60 RPGA-ADIEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYS 118
+P A AD+EV M ESHAN+RVL+ RRPRQLLR+VVALQ LTVLHLN+T+ A H+ LYS
Sbjct: 256 KPSAVADVEVTMVESHANLRVLSRRRPRQLLRLVVALQGHRLTVLHLNMTS-AGHMVLYS 314
Query: 119 FSLKMEDECRLSSVDEIAGAVNQMVTKIAGE 149
FSLK+ED+C+L+SVDEIA A +Q++ KI E
Sbjct: 315 FSLKVEDDCQLTSVDEIATAAHQIIEKIQEE 345
>Os05g0586300
Length = 492
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 64 ADIEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKM 123
ADIEV + A +++L+ RRP QL++ V AL+ + +++LH N+TT D LYSF++K+
Sbjct: 406 ADIEVRVVGVDAMIKILSRRRPGQLIKTVAALEEMHMSILHTNITTI-DQTVLYSFNVKI 464
Query: 124 EDECRLSSVDEIAGAVNQMVTKI 146
+ R S+ D IAGAV+Q+++ I
Sbjct: 465 AGDARFSAED-IAGAVHQILSFI 486
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,848,210
Number of extensions: 77041
Number of successful extensions: 246
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 7
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)