Os06g0526100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os06g0526100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.47 | 0.368 | 3 | 0.0586 | 0.144 | -0.224 | -0.141 | 0.0889 | -0.0523 | 7.7 | 83.89 | 816 | -- | -- |
| 61.48 | 0.365 | 3 | 0.065 | 0.144 | -0.224 | -0.103 | -- | -0.0516 | 7.69 | 83.86 | 817 | -- | -- |
| 61.51 | 0.365 | 3 | 0.0607 | 0.144 | -0.226 | -- | 0.0179 | -0.051 | 7.76 | 83.55 | 817 | -- | -- |
| 61.51 | 0.365 | 3 | 0.0625 | 0.145 | -0.226 | -- | -- | -0.0511 | 7.75 | 83.53 | 817 | -- | -- |
| 61.83 | 0.366 | 3 | 0.0601 | -- | -0.248 | -- | 0.0413 | -0.052 | -- | 83 | 1234 | -- | -- |
| 62.58 | 0.371 | 3 | 0.0545 | 0.0612 | -- | -0.117 | -- | -0.0385 | 4.77 | -- | -- | -- | -- |
| 62.61 | 0.371 | 3 | 0.0549 | 0.0604 | -- | -- | -- | -0.038 | 4.38 | -- | -- | -- | -- |
| 61.83 | 0.366 | 3 | 0.0635 | -- | -0.246 | -- | -- | -0.0513 | -- | 82.87 | 1234 | -- | -- |
| 61.61 | 0.366 | 3 | -- | 0.144 | -0.224 | -- | -- | -0.058 | 7.71 | 83.56 | 817 | -- | -- |
| 62.81 | 0.37 | 3 | 0.0573 | -- | -- | -- | -- | -0.0364 | -- | -- | -- | -- | -- |
| 62.69 | 0.37 | 3 | -- | 0.0614 | -- | -- | -- | -0.0441 | 4.36 | -- | -- | -- | -- |
| 61.93 | 0.367 | 3 | -- | -- | -0.241 | -- | -- | -0.058 | -- | 82.93 | 1222 | -- | -- |
| 62.9 | 0.37 | 3 | -- | -- | -- | -- | -- | -0.0427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.12 | humidity | 80.0 | 90 | < th | dose independent | rect. | 24 | 7 |
| 4 | 55.22 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 24 | 8 |
| 23 | 55.50 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 26 | 55.51 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 41 | 55.57 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 49 | 55.66 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 20 | 12 |
| 50 | 55.68 | radiation | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 65 | 55.68 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 81 | 55.69 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 84 | 55.72 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 144 | 55.72 | humidity | 70.0 | 90 | < th | dose independent | rect. | 18 | 14 |
| 609 | 56.57 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 619 | 56.60 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 622 | 56.60 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 626 | 56.60 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 632 | 56.60 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 633 | 56.60 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 653 | 56.60 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 662 | 56.64 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 665 | 56.65 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 667 | 56.66 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 674 | 56.68 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 675 | 56.68 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 677 | 56.69 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 678 | 56.69 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 679 | 56.69 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 685 | 56.71 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 691 | 56.73 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 696 | 56.74 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 698 | 56.74 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 699 | 56.74 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 703 | 56.74 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 705 | 56.74 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 710 | 56.74 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 723 | 56.74 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 724 | 56.74 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 726 | 56.74 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 731 | 56.74 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 735 | 56.76 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 760 | 56.82 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 761 | 56.83 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 762 | 56.83 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 770 | 56.87 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 779 | 56.91 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 945 | 57.79 | radiation | 30.0 | 30 | < th | dose independent | sin | 11 | NA |
| 954 | 57.90 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 978 | 58.17 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 979 | 58.17 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 23 |