BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0526100 Os06g0526100|Os06g0526100
(396 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0526100 Basic helix-loop-helix dimerisation region bHL... 651 0.0
Os02g0257500 263 2e-70
Os05g0597000 103 2e-22
Os05g0586300 100 3e-21
Os08g0483900 Basic helix-loop-helix dimerisation region bHL... 100 3e-21
Os09g0468700 Basic helix-loop-helix dimerisation region bHL... 98 1e-20
Os03g0188400 Basic helix-loop-helix dimerisation region bHL... 98 1e-20
Os10g0376900 Basic helix-loop-helix dimerisation region bHL... 98 1e-20
Os03g0122100 76 5e-14
>Os06g0526100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 396
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/396 (83%), Positives = 331/396 (83%)
Query: 1 MGDALCDQLLLVDSDGGEFIPHHADADADDLFTILETWEGCANVVXXXXXXXXXXXXSPI 60
MGDALCDQLLLVDSDGGEFIPHHADADADDLFTILETWEGCANVV SPI
Sbjct: 1 MGDALCDQLLLVDSDGGEFIPHHADADADDLFTILETWEGCANVVAGGAPATTTTLGSPI 60
Query: 61 AAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVAXXXXXXXXXXXSPQKRRKCC 120
AAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVA SPQKRRKCC
Sbjct: 61 AAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVADRDGDGDDDDGSPQKRRKCC 120
Query: 121 SPESSTTDVAAATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVD 180
SPESSTTDVAAATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVD
Sbjct: 121 SPESSTTDVAAATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVD 180
Query: 181 YIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATVAASCCXXXXXXXXXXXXXXXXKSTPP 240
YIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATVAASCC KSTPP
Sbjct: 181 YIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATVAASCCSPRPPQLSPRLPPQLLKSTPP 240
Query: 241 LSPRLAVPISPRTPPTXXXXXXXXXXXXXXXXXXXXXXXXXXMTPTHHETAAPSLDAIAA 300
LSPRLAVPISPRTPPT MTPTHHETAAPSLDAIAA
Sbjct: 241 LSPRLAVPISPRTPPTPGSPYRLLRLPPPPPPASGSNYASPAMTPTHHETAAPSLDAIAA 300
Query: 301 ELSAYASRQALGGGLLLPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAK 360
ELSAYASRQALGGGLLLPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAK
Sbjct: 301 ELSAYASRQALGGGLLLPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAK 360
Query: 361 ISTVDDTAVNSFTVKIGIECELSAEELVQVIQQTFT 396
ISTVDDTAVNSFTVKIGIECELSAEELVQVIQQTFT
Sbjct: 361 ISTVDDTAVNSFTVKIGIECELSAEELVQVIQQTFT 396
>Os02g0257500
Length = 415
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/300 (53%), Positives = 177/300 (59%), Gaps = 56/300 (18%)
Query: 136 KTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLEAK 195
K +HI VERNRRKQMNE+LAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVL SLEAK
Sbjct: 131 KMSHITVERNRRKQMNEHLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLRSLEAK 190
Query: 196 KQRKVYTDQVLSPRPPATVAASCCXXXXXXXXXXXXXXXXKSTPPLSPRL------AVPI 249
K RK Y DQVLSPRP AA K TPP+SPR VPI
Sbjct: 191 KNRKAYADQVLSPRPSPAAAA----------------LMVKPTPPISPRFAAAAAAGVPI 234
Query: 250 SPRTPP-----TXXXXXXXXXXXXXXXXXXXXXXXXXXMTPT--------------HHET 290
SPRTP M+P H +
Sbjct: 235 SPRTPTPGSPYNKHAAAAATARPPHPAAATSSCSVAYSMSPAMTPTSSSSTTTTTTHELS 294
Query: 291 AAPS----LDAIAAELSAY-----------ASRQALGGGLLLPDVKVEFAGANLVLKTVS 335
AP+ LD++ EL+A +S A+ G + +PDV+VEFAG NLVLKTVS
Sbjct: 295 PAPAFLPILDSLVTELAARGGASCRPLVIPSSAAAIAGIVGVPDVRVEFAGPNLVLKTVS 354
Query: 336 QRSPGQAVKIIAALEGRSLEILHAKISTVDDTAVNSFTVKIGIECELSAEELVQVIQQTF 395
R+PGQA+KIIAALE SLEILH I TVDD V SFT+KIGIECELSAEELVQ IQQTF
Sbjct: 355 HRAPGQALKIIAALESLSLEILHVSICTVDDATVLSFTIKIGIECELSAEELVQEIQQTF 414
>Os05g0597000
Length = 227
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 56/62 (90%)
Query: 138 AHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLEAKKQ 197
+HIAVERNRR+QMN++L VLRSL P FY+KRGDQASIIGG +D+IKELQ +L SLEA+K+
Sbjct: 2 SHIAVERNRRRQMNDHLKVLRSLTPAFYIKRGDQASIIGGAIDFIKELQTLLQSLEAQKK 61
Query: 198 RK 199
R+
Sbjct: 62 RR 63
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
Query: 317 LPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAKISTVDDTAVNSFTVKI 376
+ DV+ +GAN++L+T+S+R+P V+IIA LE LE+LH I+T+DDT + SF +KI
Sbjct: 137 MADVEARISGANVLLRTLSRRAP--PVRIIALLESLHLEVLHLNITTMDDTVLYSFVLKI 194
Query: 377 GIECELSAEELVQVIQQTF 395
G++C LS ++L + Q+F
Sbjct: 195 GLDCHLSVDDLAMEVHQSF 213
>Os05g0586300
Length = 492
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 134 TPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLE 193
+ + HIAVERNRR+QMNE L VLRSLMP YV+RGDQASIIGG +++I+EL+Q++ LE
Sbjct: 255 SQRMTHIAVERNRRRQMNEYLRVLRSLMPGSYVQRGDQASIIGGAIEFIRELEQLIQCLE 314
Query: 194 AKKQRKVY 201
++K+R++Y
Sbjct: 315 SQKRRRLY 322
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 317 LPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAKISTVDDTAVNSFTVKI 376
+ D++V G + ++K +S+R PGQ +K +AALE + ILH I+T+D T + SF VKI
Sbjct: 405 VADIEVRVVGVDAMIKILSRRRPGQLIKTVAALEEMHMSILHTNITTIDQTVLYSFNVKI 464
Query: 377 GIECELSAEELVQVIQQTFT 396
+ SAE++ + Q +
Sbjct: 465 AGDARFSAEDIAGAVHQILS 484
>Os08g0483900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 363
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 134 TPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLE 193
+ + HIAVERNRRKQMNE LAVLRSLMP YV+RGDQASIIGG ++Y+KE++Q+L SLE
Sbjct: 137 SQRMTHIAVERNRRKQMNEYLAVLRSLMPASYVQRGDQASIIGGAINYVKEMEQLLQSLE 196
Query: 194 A 194
A
Sbjct: 197 A 197
>Os09g0468700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 351
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 55/66 (83%)
Query: 134 TPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLE 193
+ + HIAVERNRRKQMNE LAVLRSLMP Y +RGDQASI+GG ++++KEL+Q+L SLE
Sbjct: 131 SQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINFVKELEQLLQSLE 190
Query: 194 AKKQRK 199
A+K +
Sbjct: 191 ARKSSR 196
>Os03g0188400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 329
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%)
Query: 136 KTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLEAK 195
+ HIAVERNRR+QMNE LAVLRSLMP Y +RGDQASI+GG ++Y+KEL+Q+L SLE +
Sbjct: 110 RMTHIAVERNRRRQMNEYLAVLRSLMPASYSQRGDQASIVGGAINYVKELEQLLQSLEVQ 169
Query: 196 KQRK 199
K K
Sbjct: 170 KSLK 173
>Os10g0376900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 328
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%)
Query: 134 TPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLE 193
+ + HIAVERNRR+QMNE LAVLRSLMP Y +RGDQASI+GG ++Y++EL+Q+L +LE
Sbjct: 108 SQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLE 167
Query: 194 AKKQRKVYTD 203
A++ K + D
Sbjct: 168 ARRTIKDHID 177
>Os03g0122100
Length = 301
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 44/55 (80%)
Query: 132 ATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQ 186
A + HIAVERNRR+ MN++LA LRSL+P Y+ RGDQA+++GG +DY+K+L+
Sbjct: 112 AENQRMTHIAVERNRRRLMNDHLASLRSLIPSNYIPRGDQATVVGGAIDYVKQLE 166
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,081,347
Number of extensions: 438263
Number of successful extensions: 1655
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1660
Number of HSP's successfully gapped: 12
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)