BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0371000 Os10g0371000|AK119798
(196 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0371000 Pollen Ole e 1 allergen and extensin domain co... 305 9e-84
Os04g0398700 Similar to Pollen specific protein C13 precursor 144 4e-35
Os06g0556600 Similar to Pollen allergen Phl p 11 117 4e-27
Os09g0572800 Ole e 1 allergen family protein 114 3e-26
Os07g0590500 Pollen Ole e 1 allergen and extensin domain co... 92 2e-19
>Os10g0371000 Pollen Ole e 1 allergen and extensin domain containing protein
Length = 196
Score = 305 bits (782), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 53 RDLRPRRAGFVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDH 112
RDLRPRRAGFVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDH
Sbjct: 53 RDLRPRRAGFVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDH 112
Query: 113 TGTYNIPVNDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALG 172
TGTYNIPVNDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALG
Sbjct: 113 TGTYNIPVNDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALG 172
Query: 173 FQKDAPLAACAQILKMYEEVDDRV 196
FQKDAPLAACAQILKMYEEVDDRV
Sbjct: 173 FQKDAPLAACAQILKMYEEVDDRV 196
>Os04g0398700 Similar to Pollen specific protein C13 precursor
Length = 165
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 89/133 (66%)
Query: 62 FVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIPVN 121
+VV+GRV+CDTC AGFET + YI GAKV++EC+ T + +G TD TGTY I +
Sbjct: 30 YVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFGTDKVERAIDGVTDETGTYKIELK 89
Query: 122 DEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALGFQKDAPLAA 181
D HE ++CE VLV SP A C +I A R+RA V LT N G+ N+RLAN LG+ KD PL
Sbjct: 90 DSHEEDICEVVLVHSPLANCSEIEAERDRARVLLTRNVGICDNLRLANPLGYLKDIPLPI 149
Query: 182 CAQILKMYEEVDD 194
C +LK ++ DD
Sbjct: 150 CGALLKQFDLADD 162
>Os06g0556600 Similar to Pollen allergen Phl p 11
Length = 175
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 60 AGFVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIP 119
GFVV GRV+CD C AGFET S I GA V VECR G ++ E TD G Y +
Sbjct: 36 GGFVVTGRVYCDPCRAGFETNVSKSIPGATVSVECRHYGAGRESLKAEATTDEKGWYKVE 95
Query: 120 VNDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSN-VRLANALGFQKDAP 178
++ +H+ E+CE VL S D C + R+R+ V LT+NNG+ N +R AN + F + P
Sbjct: 96 IDQDHQEEICEVVLDKSSDPACSETEKTRDRSRVPLTSNNGLKQNGIRYANPIAFFRKEP 155
Query: 179 LAACAQILKMYEEVD 193
LA C IL+ Y+ D
Sbjct: 156 LADCGSILQKYDLKD 170
>Os09g0572800 Ole e 1 allergen family protein
Length = 167
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 58 RRAGFVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRS--KSTGAKTCSFEGQTDHTGT 115
R F V G V+CDTC AGF+T A+T I GA+V++ECR ++GA S EG TD G
Sbjct: 25 RDPDFFVEGDVYCDTCRAGFQTNATTAIQGARVRLECRHFMSASGAVERSAEGTTDAAGH 84
Query: 116 YNIP-VNDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALGFQ 174
Y I V++ E+C L+SSPD +C + GR+RAPV L + G+ + VR AN LGF
Sbjct: 85 YRIELVDNRGAEEVCAVALLSSPDPECHETEVGRDRAPVTLVQDAGLATMVRRANPLGFL 144
Query: 175 KDAPLAACAQILKMY 189
K PL C +LK Y
Sbjct: 145 KTRPLPICGDLLKSY 159
>Os07g0590500 Pollen Ole e 1 allergen and extensin domain containing protein
Length = 168
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 79/143 (55%), Gaps = 13/143 (9%)
Query: 58 RRAGFVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRS--KSTGAKTCSFEGQTDHTGT 115
R + F V G V+CDTC AGF T +T I A+V++ECR ++G+ S EG TD TG
Sbjct: 25 RHSDFFVEGEVYCDTCRAGFVTNVTTAIQAARVRLECRHYMSASGSVERSAEGTTDATGH 84
Query: 116 YN---IPVNDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALG 172
Y + V++ +C L+SSP +C ++ GR+RAPV L + G+ + VR AN LG
Sbjct: 85 YRMELVEVDNRGAELVCAVALLSSPVTECHEMEVGRDRAPVTLVQDVGLATMVRRANPLG 144
Query: 173 FQKDAPLAACAQILKMYEEVDDR 195
F + +L Y + D R
Sbjct: 145 FLQ--------TMLARYADTDTR 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,152,722
Number of extensions: 190437
Number of successful extensions: 383
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 5
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)