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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0572800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ole e 1 allergen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0222) R2 : 0.031
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.179 (0.0468) R2dN8 : 0.04 R2N8 : 0.031
σ : 0.418
deviance : 80.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.3 0.413 2.87 -0.114 0.0858 -0.328 -0.0447 0.785 0.166 10.2 1.025 15 -- --
77.12 0.409 2.85 -0.0806 0.109 -0.264 0.0341 -- 0.202 11.9 1.5 28 -- --
76.99 0.412 2.86 -0.113 0.0912 -0.304 -- 0.658 0.168 10.2 1.024 16 -- --
77.06 0.409 2.86 -0.128 0.102 -0.274 -- -- 0.191 12.1 1.5 28 -- --
77.47 0.41 2.87 -0.139 -- -0.304 -- 0.737 0.175 -- 1.236 20 -- --
79.43 0.418 2.86 -0.0517 0.124 -- -0.0413 -- 0.171 7.37 -- -- -- --
79.44 0.417 2.86 -0.0526 0.124 -- -- -- 0.171 7.38 -- -- -- --
77.64 0.41 2.86 -0.114 -- -0.25 -- -- 0.184 -- 1.46 32 -- --
77.41 0.41 2.85 -- 0.0955 -0.256 -- -- 0.198 11.7 1.404 32 -- --
80.26 0.419 2.86 -0.0506 -- -- -- -- 0.173 -- -- -- -- --
79.51 0.417 2.86 -- 0.124 -- -- -- 0.177 7.41 -- -- -- --
77.96 0.411 2.86 -- -- -0.233 -- -- 0.196 -- 1.426 32 -- --
80.33 0.418 2.86 -- -- -- -- -- 0.179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.07 radiation 1.0 4320 < th dose dependent rect. 3 1
2 75.10 temperature 20.0 30 > th dose independent rect. 2 1
3 75.10 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 75.11 atmosphere 1005.0 30 > th dose independent rect. 2 1
5 75.11 temperature 15.0 30 > th dose dependent rect. 2 1
8 75.12 wind 3.0 30 < th dose independent rect. 2 1
13 75.13 humidity 80.0 30 > th dose independent rect. 2 1
14 75.13 wind 5.0 30 < th dose dependent rect. 2 1
18 75.14 temperature 10.0 30 > th dose independent rect. 2 1
20 75.14 temperature 30.0 30 < th dose independent rect. 2 1
21 75.14 humidity 50.0 30 > th dose independent rect. 2 1
24 75.14 atmosphere 995.0 30 > th dose independent rect. 2 1
26 75.14 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 75.14 radiation 1.0 30 < th dose independent rect. 2 1
33 75.14 precipitation 0.1 30 < th dose independent rect. 2 1
34 75.14 temperature 10.0 30 > th dose independent rect. 3 23
36 75.14 humidity 50.0 30 > th dose dependent rect. 2 1
38 75.14 radiation 1.0 30 < th dose dependent rect. 2 1
43 75.14 precipitation 0.1 30 < th dose dependent rect. 2 1
50 75.16 wind 9.0 1440 < th dose independent rect. 3 1
51 75.16 temperature 10.0 1440 > th dose independent rect. 3 1
55 75.16 temperature 30.0 1440 < th dose independent rect. 3 1
59 75.16 humidity 50.0 1440 > th dose independent rect. 3 1
68 75.16 atmosphere 995.0 1440 > th dose independent rect. 3 1
69 75.16 radiation 1.0 1440 < th dose independent rect. 3 1
89 75.16 temperature 10.0 1440 > th dose independent rect. 4 23
108 75.20 atmosphere 1015.0 30 < th dose dependent rect. 2 1
110 75.24 temperature 30.0 30 < th dose dependent rect. 2 1
113 75.27 wind 1.0 30 > th dose independent rect. 2 1
128 75.37 atmosphere 995.0 30 > th dose independent rect. 3 23
165 75.54 humidity 50.0 10 > th dose independent rect. 3 23
168 75.61 precipitation 0.1 30 < th dose independent rect. 3 23
169 75.61 precipitation 0.1 30 < th dose dependent rect. 3 23
176 75.83 humidity 80.0 4320 < th dose dependent rect. 3 1
183 75.97 humidity 80.0 4320 > th dose independent rect. 3 3
186 75.99 humidity 80.0 4320 < th dose independent rect. 3 3
198 76.08 wind 9.0 4320 > th dose dependent rect. 13 2
208 76.30 wind 9.0 30 < th dose independent rect. 3 23
209 76.31 humidity 50.0 4320 > th dose dependent rect. 4 1
239 76.59 humidity 80.0 4320 < th dose dependent rect. 21 9
241 76.60 humidity 80.0 4320 < th dose independent rect. 23 9
245 76.65 humidity 80.0 4320 > th dose independent rect. 23 9
247 76.65 humidity 80.0 4320 < th dose dependent rect. 22 2
258 76.69 wind 9.0 4320 > th dose independent rect. 13 2
280 76.77 temperature 25.0 30 > th dose independent rect. 10 1
284 76.77 temperature 25.0 30 > th dose dependent rect. 10 1
287 76.78 wind 1.0 30 < th dose independent rect. 10 1
288 76.78 temperature 10.0 1440 > th dose independent rect. 11 1
292 76.78 atmosphere 995.0 1440 > th dose independent rect. 11 1
295 76.78 precipitation 0.1 1440 < th dose independent rect. 11 1
298 76.78 temperature 10.0 1440 > th dose independent rect. 12 23
301 76.78 wind 1.0 30 < th dose dependent rect. 10 1
303 76.78 precipitation 0.1 1440 < th dose dependent rect. 11 1
308 76.78 temperature 30.0 14400 > th dose dependent rect. 16 17
310 76.79 temperature 30.0 14400 > th dose dependent rect. 16 3
323 76.79 atmosphere 995.0 30 > th dose dependent rect. 2 13
328 76.80 humidity 70.0 30 < th dose independent rect. 10 1
331 76.80 temperature 30.0 14400 > th dose dependent rect. 16 1
333 76.81 temperature 30.0 14400 > th dose dependent rect. 18 1
350 76.82 atmosphere 1010.0 30 < th dose independent rect. 10 1
351 76.82 radiation 20.0 30 > th dose independent rect. 10 1
357 76.83 wind 1.0 90 > th dose independent rect. 3 23
385 76.86 humidity 80.0 30 < th dose dependent rect. 10 1
389 76.87 atmosphere 1005.0 30 > th dose independent rect. 10 1
397 76.88 temperature 30.0 14400 < th dose independent rect. 18 15
401 76.89 humidity 60.0 30 > th dose independent rect. 10 1
402 76.89 wind 5.0 30 < th dose dependent rect. 10 1
413 76.90 atmosphere 995.0 30 > th dose dependent rect. 10 1
420 76.91 temperature 30.0 14400 < th dose independent rect. 4 5
422 76.91 temperature 30.0 14400 < th dose independent rect. 18 9
423 76.91 wind 1.0 10 > th dose independent rect. 15 23
424 76.91 temperature 30.0 14400 > th dose dependent sin 11 NA
444 76.92 wind 1.0 30 > th dose independent rect. 10 1
446 76.92 temperature 10.0 30 > th dose independent rect. 10 1
448 76.92 temperature 30.0 14400 < th dose independent rect. 8 1
450 76.92 humidity 90.0 30 < th dose independent rect. 10 1
451 76.92 atmosphere 995.0 30 > th dose independent rect. 10 1
455 76.92 precipitation 0.1 30 < th dose independent rect. 10 1
456 76.92 temperature 30.0 14400 < th dose independent rect. 18 2
460 76.92 temperature 30.0 14400 < th dose independent rect. 23 10
461 76.92 temperature 30.0 14400 < th dose independent rect. 21 12
462 76.92 temperature 10.0 30 > th dose independent rect. 11 23
463 76.92 precipitation 0.1 30 < th dose dependent rect. 10 1
473 76.93 temperature 30.0 30 < th dose independent rect. 10 1
478 76.93 temperature 30.0 30 < th dose independent rect. 3 23
480 76.93 radiation 1.0 30 > th dose dependent rect. 10 1
482 76.94 temperature 30.0 14400 > th dose independent rect. 8 1
485 76.94 radiation 40.0 30 < th dose independent rect. 10 1
508 76.95 temperature 30.0 14400 < th dose independent rect. 18 4
521 76.96 temperature 30.0 14400 > th dose dependent rect. 8 1
539 76.97 wind 9.0 4320 < th dose independent rect. 13 2
543 76.97 temperature 30.0 14400 < th dose independent rect. 18 11
579 77.00 wind 1.0 10 > th dose independent rect. 11 23
627 77.03 radiation 40.0 30 < th dose dependent rect. 3 23
628 77.04 temperature 30.0 14400 > th dose independent rect. 17 2
634 77.04 humidity 70.0 4320 > th dose independent rect. 21 6
650 77.04 atmosphere 1015.0 30 < th dose dependent rect. 10 1
654 77.05 humidity 80.0 4320 < th dose independent rect. 23 1
746 77.09 temperature 30.0 14400 > th dose independent sin 10 NA
759 77.10 humidity 70.0 4320 > th dose independent rect. 21 1
795 77.11 temperature 30.0 14400 < th dose independent sin 10 NA
799 77.11 humidity 50.0 30 > th dose dependent rect. 10 1
810 77.12 radiation 40.0 30 < th dose dependent rect. 10 1
846 77.14 wind 1.0 10 < th dose independent rect. 5 22
872 77.15 temperature 30.0 14400 > th dose dependent no NA NA
876 77.15 temperature 30.0 14400 > th dose dependent rect. 9 10