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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0590500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pollen Ole e 1 allergen and extensin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.77 (0.0257) R2 : 0.227
β1 : 0.376 (0.094) R2dD : 0.0282 R2D : 0.0175
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.85 (0.221) R2dE : 0.142 R2E : -0.0049
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.82 (0.92) R2dD*E : 0.186 R2D*E : 0.0609
γ1 : 0.153 (0.0551) R2dN8 : 0.0178 R2N8 : 0.00271
σ : 0.479
deviance : 105.96
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_____
C
peak time of C : --
E
wheather : wind
threshold : 4.903
memory length : 98
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.1
open length of G : 10.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.23 0.482 2.78 0.375 0.0809 1.89 0.363 9.04 0.154 16.1 4.9 98 23.1 10.6
127.19 0.525 2.74 0.424 0.0725 1.21 -0.26 -- 0.227 16.4 4.9 109 23.3 10.7
105.59 0.479 2.78 0.378 0.0834 1.89 -- 8.95 0.149 16.8 4.9 98 23.1 10.6
126.85 0.525 2.76 0.403 0.0572 0.995 -- -- 0.175 17.3 4.9 103 23.4 11
105.96 0.479 2.77 0.376 -- 1.85 -- 8.82 0.153 -- 4.903 98 23.1 10.6
132.86 0.54 2.77 0.36 0.024 -- -0.175 -- 0.134 19 -- -- -- --
132.92 0.54 2.77 0.363 0.0286 -- -- -- 0.134 16.9 -- -- -- --
127.12 0.525 2.76 0.393 -- 0.926 -- -- 0.171 -- 4.895 103 23.3 11.1
130.97 0.533 2.77 -- 0.068 0.904 -- -- 0.157 16.6 4.861 103 23.3 11
132.97 0.539 2.77 0.362 -- -- -- -- 0.133 -- -- -- -- --
136.4 0.546 2.78 -- 0.0223 -- -- -- 0.0937 17.4 -- -- -- --
130.88 0.533 2.77 -- -- 0.913 -- -- 0.133 -- 4.3 111 23.3 10.9
136.43 0.545 2.78 -- -- -- -- -- 0.0933 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.72 wind 5.0 90 > th dose independent rect. 23 11
2 107.73 wind 5.0 90 > th dose independent rect. 19 15
3 109.04 wind 5.0 90 > th dose dependent rect. 19 15
4 109.25 wind 5.0 90 > th dose independent rect. 21 13
7 110.02 wind 3.0 90 > th dose dependent rect. 23 11
9 110.53 wind 5.0 90 > th dose dependent rect. 21 13
13 111.18 wind 5.0 90 > th dose dependent rect. 1 8
27 114.38 wind 5.0 90 < th dose independent sin 10 NA
30 114.65 wind 5.0 90 > th dose independent sin 10 NA
41 115.87 wind 7.0 90 > th dose independent rect. 8 1
49 115.87 wind 7.0 90 > th dose dependent rect. 8 1
70 116.55 wind 3.0 90 > th dose dependent sin 10 NA
97 117.94 wind 1.0 10 < th dose independent rect. 13 1
99 117.94 wind 1.0 10 < th dose dependent rect. 13 1
100 117.94 atmosphere 1000.0 10 < th dose dependent rect. 13 1
110 117.97 atmosphere 1000.0 90 < th dose independent rect. 13 1
130 118.16 precipitation 0.1 270 > th dose independent rect. 22 1
131 118.16 precipitation 0.1 270 > th dose dependent rect. 22 1
153 118.61 humidity 90.0 1440 < th dose independent rect. 4 2
174 118.83 humidity 80.0 90 < th dose dependent rect. 8 1
190 119.18 humidity 80.0 90 < th dose dependent rect. 4 5
202 119.44 wind 5.0 90 > th dose independent rect. 19 7
205 119.51 humidity 70.0 90 < th dose independent rect. 8 2
219 119.52 temperature 25.0 720 < th dose dependent rect. 14 1
220 119.54 humidity 90.0 1440 > th dose independent rect. 4 1
224 119.56 wind 3.0 10 > th dose dependent rect. 24 7
236 119.69 wind 5.0 90 > th dose dependent rect. 19 7
237 119.71 humidity 90.0 1440 > th dose independent rect. 2 4
266 119.95 radiation 40.0 10 > th dose dependent rect. 14 1
305 120.02 wind 5.0 90 > th dose independent rect. 23 3
342 120.27 humidity 80.0 1440 > th dose dependent rect. 4 1
366 120.41 humidity 70.0 10 < th dose independent rect. 9 1
370 120.41 humidity 50.0 1440 > th dose dependent rect. 4 1
395 120.47 wind 7.0 270 > th dose independent rect. 21 1
397 120.47 wind 7.0 270 > th dose dependent rect. 21 1
409 120.57 wind 5.0 90 > th dose dependent rect. 23 2
437 120.69 wind 7.0 270 > th dose dependent rect. 19 3
446 120.75 temperature 25.0 720 < th dose dependent rect. 11 6
465 120.86 temperature 25.0 720 < th dose dependent rect. 9 8
470 120.93 wind 3.0 10 > th dose dependent rect. 24 2
513 121.06 wind 5.0 90 > th dose dependent rect. 23 6
531 121.14 wind 7.0 90 < th dose dependent sin 9 NA
603 121.47 radiation 1.0 720 < th dose independent rect. 15 1
638 121.68 wind 5.0 90 > th dose independent rect. 21 5
647 121.74 precipitation 0.1 270 > th dose independent rect. 15 10
724 122.00 wind 1.0 90 > th dose dependent rect. 12 22
742 122.04 wind 5.0 90 > th dose independent rect. 21 8
822 122.32 wind 5.0 720 < th dose independent rect. 19 17
841 122.38 radiation 10.0 720 < th dose dependent rect. 14 1
912 122.60 temperature 25.0 720 < th dose dependent sin 23 NA
939 122.67 wind 7.0 720 > th dose independent rect. 24 9
946 122.69 wind 3.0 90 > th dose independent rect. 13 21
951 122.71 precipitation 0.1 270 > th dose independent sin 15 NA
952 122.71 precipitation 0.1 270 < th dose independent sin 15 NA
954 122.71 precipitation 0.1 270 < th dose dependent sin 15 NA
956 122.73 humidity 90.0 720 < th dose independent rect. 10 7