BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0590500 Os07g0590500|J023091E19
(168 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45880.1 | chr5:18609934-18611066 REVERSE LENGTH=175 82 1e-16
AT4G18596.1 | chr4:10239114-10239728 FORWARD LENGTH=173 81 3e-16
AT1G29140.1 | chr1:10179029-10179811 FORWARD LENGTH=172 80 5e-16
AT4G08685.1 | chr4:5550563-5551259 FORWARD LENGTH=160 78 3e-15
AT5G10130.1 | chr5:3171551-3172428 REVERSE LENGTH=165 70 4e-13
AT1G78040.1 | chr1:29345993-29346840 FORWARD LENGTH=172 60 4e-10
>AT5G45880.1 | chr5:18609934-18611066 REVERSE LENGTH=175
Length = 174
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 29 FFVEGEVYCDTCRAGFVTNVTTAIQAARVRLECRHYMSASGSVERSAEGTTDATGHYRME 88
F ++G VYCDTCR FVT ++ ++ A+V+LECR +G++ + E TD TG Y+M
Sbjct: 35 FQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRS--RTNGTITLTKEAVTDKTGSYKM- 91
Query: 89 LVEVDNRGAELVCAVALLSSPVTECHEMEVG---RDRAPVTLVQDVGLATM-VRRANPLG 144
EV E VC + L+ SP + C ++ R+ A ++L + G+ + R NPLG
Sbjct: 92 --EVTGDHEEEVCELVLVQSPDSGCSDVSTEAYLRNAAKISLTANDGIVSHETRIVNPLG 149
Query: 145 FL-QTMLA 151
F+ QT LA
Sbjct: 150 FMVQTPLA 157
>AT4G18596.1 | chr4:10239114-10239728 FORWARD LENGTH=173
Length = 172
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 9/122 (7%)
Query: 29 FFVEGEVYCDTCRAGFVTNVTTAIQAARVRLECRHYMSASGSVERSAEGTTDATGHYRME 88
F ++G VYCDTCR FVT ++ ++ A+V+LECR +G+V + E TD TG YRM
Sbjct: 33 FQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRS--RTNGTVTLTKEAVTDKTGSYRM- 89
Query: 89 LVEVDNRGAELVCAVALLSSPVTECHEMEVG---RDRAPVTLVQDVGLATM-VRRANPLG 144
EV E VC + L+ SP + C ++ R+ A ++L + G+ + R NPLG
Sbjct: 90 --EVTGDHEEEVCELVLVESPDSGCSDVSKEAYLRNAAKISLTANDGIVSHETRIVNPLG 147
Query: 145 FL 146
F+
Sbjct: 148 FM 149
>AT1G29140.1 | chr1:10179029-10179811 FORWARD LENGTH=172
Length = 171
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 10/129 (7%)
Query: 29 FFVEGEVYCDTCRAGFVTNVTTAIQAARVRLECRHYMSASGSVERSAEGTTDATGHYRME 88
F ++G VYCDTCR F+T ++ ++ A+V+LEC+ + +V + E TD G+Y+ME
Sbjct: 32 FHIKGSVYCDTCRVQFITRISKFLEGAKVKLECKG--RENQTVTLTKEAVTDNAGNYQME 89
Query: 89 LVEVDNRGAELVCAVALLSSPVTEC---HEMEVGRDRAPVTLVQDVGLATM-VRRANPLG 144
++ E VC + LL SP EC + E R+ A ++L + G+ + R NPLG
Sbjct: 90 VM---GDHEEEVCEIVLLQSPDPECGDVNNQEFLRNAARISLTANDGIVSNETRTINPLG 146
Query: 145 FL-QTMLAR 152
F+ +T LA
Sbjct: 147 FMRKTPLAE 155
>AT4G08685.1 | chr4:5550563-5551259 FORWARD LENGTH=160
Length = 159
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 29 FFVEGEVYCDTCRAGFVTNVTTAIQAARVRLECRHYMSASGSVERSAEGTTDATGHYRME 88
F V G VYCDTC AGF T +T I A VRLEC+ + + S E TD+TG Y++
Sbjct: 27 FVVRGRVYCDTCLAGFETPASTYISGAVVRLECKDRRTM--ELTYSHEARTDSTGSYKI- 83
Query: 89 LVEVDNRGAELVCAVALLSSPVTECHEMEVGRDRAPVTLVQDVGLATMVRRANPLGFLQ 147
LV D+ E C L+ S C + G DRA VTL + G+A+ R AN +GFL+
Sbjct: 84 LVNEDHD--EQFCDAMLVRSSQLRCSNVSPGHDRARVTLTRFNGIASDDRFANNMGFLR 140
>AT5G10130.1 | chr5:3171551-3172428 REVERSE LENGTH=165
Length = 164
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 27 SDFFVEGEVYCDTCRAGFVTNVTTAIQAARVRLECRHYMSASGSVERSAEGTTDATGHYR 86
+ F +EG VYCDTCR GF T T I+ ARVR+ C+ ++ E T G Y+
Sbjct: 26 TPFHIEGSVYCDTCRFGFETIATQYIRGARVRIVCKDRVTLKS--ELVGVAVTGPDGKYK 83
Query: 87 MELVEVDNRGAELVCAVALLSSPVTECHEMEVGRDRAPVTLVQDVGLATMVRRANPLGFL 146
V V + C L+ SP++ C E + GR A V L + G A+ AN +GF
Sbjct: 84 ---VAVRGDRQDQQCLAELVHSPLSRCQEADPGRSTATVILTRSNGAASTRHYANAMGFF 140
Query: 147 Q--------TMLARY-ADTDTRYV 161
+ + RY AD D R +
Sbjct: 141 RDEPLRGCAALRKRYLADGDNRAI 164
>AT1G78040.1 | chr1:29345993-29346840 FORWARD LENGTH=172
Length = 171
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 31 VEGEVYCDTCRAGFVTNVTTA-IQAARVRLECRHYMSASGSVERSAEGTTDATGHYRMEL 89
V+G YCD C+ GF T ++ I A V+L C+ + A +D G Y+ +
Sbjct: 32 VQGSTYCDICKFGFETPESSYFIPGATVKLSCKDRKTMEEVYTDKA--VSDKEGKYKF-I 88
Query: 90 VEVDNRGAELVCAVALLSSPVTECHEMEVGRDRAPVTLVQDVGLATMVRRANPLGF 145
V D+R + +C V L+ S C ++ VGR+++ V L G+A+ +R AN +GF
Sbjct: 89 VHDDHR--DQMCDVLLVKSSDKTCSKISVGREKSRVILNHYSGIASQIRHANNMGF 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,842,409
Number of extensions: 93307
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 6
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)