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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0398700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pollen specific protein C13 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.49 (0.0583) R2 : 0.439
β1 : -0.0308 (0.212) R2dD : 7.56e-05 R2D : 4e-04
β2 : 1.3 (0.137) R2dC : 0.121 R2C : 0.132
β3 : 2.47 (0.219) R2dE : 0.184 R2E : 0.0491
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.5 (0.944) R2dD*E : 0.256 R2D*E : 0.136
γ1 : 0.0938 (0.127) R2dN8 : 0.000853 R2N8 : -0.00171
σ : 1.06
deviance : 521.39
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_____
C
peak time of C : 10.5
E
wheather : wind
threshold : 5.4
memory length : 4383
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.5
open length of G : 3.48

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
521.92 1.07 4.5 -0.147 1.35 2.34 -0.957 12 0.0568 10.6 5.127 4326 19 3.18
565.86 1.11 4.31 0.0126 1.43 2.86 -0.538 -- 0.224 10.8 7.894 11083 19.2 1.87
521.39 1.06 4.49 -0.0308 1.3 2.47 -- 12.5 0.0938 10.5 5.4 4383 18.5 3.48
553.4 1.1 4.31 0.0804 1.46 2.82 -- -- 0.363 10.5 10.78 13857 17.3 4.02
628.93 1.17 4.53 -0.0526 -- 2.57 -- 13.3 0.119 -- 5.334 4324 18.3 3.65
797.83 1.32 4.45 -0.238 1.42 -- -0.99 -- -0.044 10.7 -- -- -- --
801.67 1.33 4.45 -0.276 1.42 -- -- -- -0.0453 10.9 -- -- -- --
673.55 1.21 4.32 -0.242 -- 2.92 -- -- 0.387 -- 10.79 13276 18 4.3
550.57 1.09 4.32 -- 1.42 2.91 -- -- 0.384 10.8 10.79 10987 16.9 4.88
927.55 1.42 4.48 -0.306 -- -- -- -- -0.055 -- -- -- -- --
803.67 1.33 4.44 -- 1.43 -- -- -- -0.0146 10.9 -- -- -- --
674.66 1.21 4.32 -- -- 2.91 -- -- 0.433 -- 10.77 13197 17.9 4.29
930.02 1.42 4.48 -- -- -- -- -- -0.0211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 523.15 wind 5 4320 > th dose dependent rect. 19 3
5 526.69 wind 7 4320 < th dose independent rect. 18 9
11 528.40 wind 7 4320 < th dose independent rect. 18 4
18 533.93 wind 7 4320 > th dose independent rect. 18 4
19 534.57 wind 7 4320 > th dose independent rect. 18 9
74 554.63 humidity 90 1440 < th dose dependent rect. 3 1
167 567.94 atmosphere 995 14400 < th dose independent rect. 18 1
170 567.94 atmosphere 995 14400 < th dose dependent rect. 18 1
208 572.19 atmosphere 995 14400 > th dose independent rect. 17 1
212 572.55 atmosphere 995 14400 > th dose independent rect. 17 3
221 573.24 humidity 90 1440 < th dose dependent rect. 3 3
225 574.00 humidity 90 1440 < th dose dependent rect. 2 5
231 575.55 humidity 90 1440 < th dose dependent rect. 5 1
277 577.40 temperature 20 1440 > th dose independent rect. 18 1
282 577.50 atmosphere 1005 14400 > th dose independent rect. 3 3
283 577.64 atmosphere 1005 14400 > th dose independent rect. 2 5
284 577.67 atmosphere 1005 14400 > th dose independent rect. 24 9
285 577.69 atmosphere 995 14400 > th dose independent rect. 8 12
286 577.73 atmosphere 995 14400 > th dose independent rect. 13 7
292 577.85 atmosphere 1005 14400 > th dose independent rect. 24 7
293 577.91 atmosphere 995 14400 > th dose independent rect. 11 9
327 578.79 atmosphere 1005 14400 < th dose independent rect. 2 6
328 578.83 atmosphere 1005 14400 < th dose independent rect. 2 4
330 578.87 atmosphere 1005 14400 < th dose independent rect. 24 8
334 578.98 atmosphere 1005 14400 < th dose independent rect. 3 2
453 582.04 temperature 20 720 < th dose independent rect. 11 9
458 582.16 temperature 20 720 < th dose independent rect. 9 11
479 583.16 temperature 20 720 < th dose independent rect. 18 2
542 585.15 atmosphere 1005 14400 > th dose independent sin 8 NA
574 586.28 atmosphere 1005 14400 < th dose independent sin 7 NA
580 586.49 atmosphere 1005 14400 < th dose independent rect. 7 1
582 586.71 humidity 50 1440 > th dose dependent rect. 3 1
667 589.62 humidity 80 1440 < th dose independent rect. 22 1
669 589.66 atmosphere 995 14400 > th dose independent rect. 4 11
675 589.74 atmosphere 995 14400 < th dose independent rect. 4 12
740 591.16 atmosphere 995 14400 > th dose independent rect. 20 20
762 591.81 wind 5 4320 > th dose dependent sin 13 NA
767 592.08 radiation 1 14400 < th dose dependent rect. 22 6
776 592.39 radiation 1 14400 < th dose dependent rect. 20 8
791 592.68 wind 5 14400 > th dose independent rect. 13 18
838 593.98 atmosphere 995 14400 > th dose independent sin 4 NA
842 594.02 wind 5 14400 < th dose independent rect. 13 18
910 595.21 atmosphere 995 14400 < th dose dependent sin 0 NA
939 595.84 atmosphere 995 14400 < th dose independent sin 3 NA
951 596.05 radiation 1 14400 < th dose dependent rect. 1 1
979 596.47 atmosphere 995 14400 > th dose independent sin 23 NA