BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0398700 Os04g0398700|Os04g0398700
         (165 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08685.1  | chr4:5550563-5551259 FORWARD LENGTH=160            125   1e-29
AT5G45880.1  | chr5:18609934-18611066 REVERSE LENGTH=175          120   2e-28
AT5G10130.1  | chr5:3171551-3172428 REVERSE LENGTH=165            120   2e-28
AT4G18596.1  | chr4:10239114-10239728 FORWARD LENGTH=173          118   1e-27
AT1G29140.1  | chr1:10179029-10179811 FORWARD LENGTH=172          115   9e-27
AT1G78040.1  | chr1:29345993-29346840 FORWARD LENGTH=172          100   5e-22

>AT4G08685.1 | chr4:5550563-5551259 FORWARD LENGTH=160
          Length = 159

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 91/154 (59%)

Query: 9   VIFGILFYVLASTATATDAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFGTD 68
           ++  + F    + A   +   +VV+GRVYCDTC AGFET  + YI GA VRLECK   T 
Sbjct: 6   LLVALCFLPALAIAARPNKNPFVVRGRVYCDTCLAGFETPASTYISGAVVRLECKDRRTM 65

Query: 69  KVERAIDGVTDETGTYKIELKDSHEEDICEVVLVHSPLANCSEIEAERDRARVLLTRNVG 128
           ++  + +  TD TG+YKI + + H+E  C+ +LV S    CS +    DRARV LTR  G
Sbjct: 66  ELTYSHEARTDSTGSYKILVNEDHDEQFCDAMLVRSSQLRCSNVSPGHDRARVTLTRFNG 125

Query: 129 ICDNLRLANPLGYLKDIPLPICGALLKQFDLADD 162
           I  + R AN +G+L+D  +P C  ++K +   +D
Sbjct: 126 IASDDRFANNMGFLRDAAMPGCADIMKLYQETED 159



>AT5G45880.1 | chr5:18609934-18611066 REVERSE LENGTH=175
          Length = 174

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 88/137 (64%), Gaps = 4/137 (2%)

Query: 30  YVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFGTDKVERAIDGVTDETGTYKIELK 89
           + +QG VYCDTCR  F T ++++++GAKV+LEC+      +    + VTD+TG+YK+E+ 
Sbjct: 35  FQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRSRTNGTITLTKEAVTDKTGSYKMEVT 94

Query: 90  DSHEEDICEVVLVHSPLANCSEIEAE---RDRARVLLTRNVGICDN-LRLANPLGYLKDI 145
             HEE++CE+VLV SP + CS++  E   R+ A++ LT N GI  +  R+ NPLG++   
Sbjct: 95  GDHEEEVCELVLVQSPDSGCSDVSTEAYLRNAAKISLTANDGIVSHETRIVNPLGFMVQT 154

Query: 146 PLPICGALLKQFDLADD 162
           PL  C A  K+  +  D
Sbjct: 155 PLADCPAAFKELGIVPD 171



>AT5G10130.1 | chr5:3171551-3172428 REVERSE LENGTH=165
          Length = 164

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 2/159 (1%)

Query: 7   IPVIFGILFYVLASTATATDAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFG 66
           +P+I  +   VL   A A   P + ++G VYCDTCR GFET  T+YI+GA+VR+ CK   
Sbjct: 6   VPLIAVLCVLVLPLAAMAVGTP-FHIEGSVYCDTCRFGFETIATQYIRGARVRIVCKDRV 64

Query: 67  TDKVERAIDGVTDETGTYKIELKDSHEEDICEVVLVHSPLANCSEIEAERDRARVLLTRN 126
           T K E     VT   G YK+ ++   ++  C   LVHSPL+ C E +  R  A V+LTR+
Sbjct: 65  TLKSELVGVAVTGPDGKYKVAVRGDRQDQQCLAELVHSPLSRCQEADPGRSTATVILTRS 124

Query: 127 VGICDNLRLANPLGYLKDIPLPICGALLKQFDLADDDNE 165
            G       AN +G+ +D PL  C AL K++ LAD DN 
Sbjct: 125 NGAASTRHYANAMGFFRDEPLRGCAALRKRY-LADGDNR 162



>AT4G18596.1 | chr4:10239114-10239728 FORWARD LENGTH=173
          Length = 172

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 90/145 (62%), Gaps = 4/145 (2%)

Query: 22  ATATDAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFGTDKVERAIDGVTDET 81
           A A D   + +QG VYCDTCR  F T ++++++GAKV+LEC+      V    + VTD+T
Sbjct: 25  ADADDFDRFQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRSRTNGTVTLTKEAVTDKT 84

Query: 82  GTYKIELKDSHEEDICEVVLVHSPLANCSEIEAE---RDRARVLLTRNVGICDN-LRLAN 137
           G+Y++E+   HEE++CE+VLV SP + CS++  E   R+ A++ LT N GI  +  R+ N
Sbjct: 85  GSYRMEVTGDHEEEVCELVLVESPDSGCSDVSKEAYLRNAAKISLTANDGIVSHETRIVN 144

Query: 138 PLGYLKDIPLPICGALLKQFDLADD 162
           PLG++   P   C A  K+  +  D
Sbjct: 145 PLGFMVQTPSAECPAAFKELGIVPD 169



>AT1G29140.1 | chr1:10179029-10179811 FORWARD LENGTH=172
          Length = 171

 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 7/147 (4%)

Query: 23  TATDAPDY---VVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFGTDKVERAIDGVTD 79
           TA DA D+    ++G VYCDTCR  F T ++++++GAKV+LECK      V    + VTD
Sbjct: 22  TAADADDFDKFHIKGSVYCDTCRVQFITRISKFLEGAKVKLECKGRENQTVTLTKEAVTD 81

Query: 80  ETGTYKIELKDSHEEDICEVVLVHSPLANCSEIEAE---RDRARVLLTRNVGICDN-LRL 135
             G Y++E+   HEE++CE+VL+ SP   C ++  +   R+ AR+ LT N GI  N  R 
Sbjct: 82  NAGNYQMEVMGDHEEEVCEIVLLQSPDPECGDVNNQEFLRNAARISLTANDGIVSNETRT 141

Query: 136 ANPLGYLKDIPLPICGALLKQFDLADD 162
            NPLG+++  PL  C  + K+  +  D
Sbjct: 142 INPLGFMRKTPLAECPQVFKELGIVPD 168



>AT1G78040.1 | chr1:29345993-29346840 FORWARD LENGTH=172
          Length = 171

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 1/136 (0%)

Query: 31  VVQGRVYCDTCRAGFETNVTEY-IKGAKVRLECKHFGTDKVERAIDGVTDETGTYKIELK 89
           VVQG  YCD C+ GFET  + Y I GA V+L CK   T +       V+D+ G YK  + 
Sbjct: 31  VVQGSTYCDICKFGFETPESSYFIPGATVKLSCKDRKTMEEVYTDKAVSDKEGKYKFIVH 90

Query: 90  DSHEEDICEVVLVHSPLANCSEIEAERDRARVLLTRNVGICDNLRLANPLGYLKDIPLPI 149
           D H + +C+V+LV S    CS+I   R+++RV+L    GI   +R AN +G+ K++    
Sbjct: 91  DDHRDQMCDVLLVKSSDKTCSKISVGREKSRVILNHYSGIASQIRHANNMGFEKEVSDVF 150

Query: 150 CGALLKQFDLADDDNE 165
           C AL +++ + +D+++
Sbjct: 151 CSALFQKYMVDEDEDD 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,583,527
Number of extensions: 142166
Number of successful extensions: 399
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 6
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)