BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0398700 Os04g0398700|Os04g0398700
(165 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0398700 Similar to Pollen specific protein C13 precursor 337 2e-93
Os09g0572800 Ole e 1 allergen family protein 149 1e-36
Os10g0371000 Pollen Ole e 1 allergen and extensin domain co... 144 3e-35
Os06g0556600 Similar to Pollen allergen Phl p 11 142 9e-35
Os07g0590500 Pollen Ole e 1 allergen and extensin domain co... 122 9e-29
>Os04g0398700 Similar to Pollen specific protein C13 precursor
Length = 165
Score = 337 bits (864), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MASLRTIPVIFGILFYVLASTATATDAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRL 60
MASLRTIPVIFGILFYVLASTATATDAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRL
Sbjct: 1 MASLRTIPVIFGILFYVLASTATATDAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRL 60
Query: 61 ECKHFGTDKVERAIDGVTDETGTYKIELKDSHEEDICEVVLVHSPLANCSEIEAERDRAR 120
ECKHFGTDKVERAIDGVTDETGTYKIELKDSHEEDICEVVLVHSPLANCSEIEAERDRAR
Sbjct: 61 ECKHFGTDKVERAIDGVTDETGTYKIELKDSHEEDICEVVLVHSPLANCSEIEAERDRAR 120
Query: 121 VLLTRNVGICDNLRLANPLGYLKDIPLPICGALLKQFDLADDDNE 165
VLLTRNVGICDNLRLANPLGYLKDIPLPICGALLKQFDLADDDNE
Sbjct: 121 VLLTRNVGICDNLRLANPLGYLKDIPLPICGALLKQFDLADDDNE 165
>Os09g0572800 Ole e 1 allergen family protein
Length = 167
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 93/136 (68%), Gaps = 3/136 (2%)
Query: 28 PDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHF--GTDKVERAIDGVTDETGTYK 85
PD+ V+G VYCDTCRAGF+TN T I+GA+VRLEC+HF + VER+ +G TD G Y+
Sbjct: 27 PDFFVEGDVYCDTCRAGFQTNATTAIQGARVRLECRHFMSASGAVERSAEGTTDAAGHYR 86
Query: 86 IELKDSH-EEDICEVVLVHSPLANCSEIEAERDRARVLLTRNVGICDNLRLANPLGYLKD 144
IEL D+ E++C V L+ SP C E E RDRA V L ++ G+ +R ANPLG+LK
Sbjct: 87 IELVDNRGAEEVCAVALLSSPDPECHETEVGRDRAPVTLVQDAGLATMVRRANPLGFLKT 146
Query: 145 IPLPICGALLKQFDLA 160
PLPICG LLK + L
Sbjct: 147 RPLPICGDLLKSYALG 162
>Os10g0371000 Pollen Ole e 1 allergen and extensin domain containing protein
Length = 196
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 89/133 (66%)
Query: 30 YVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFGTDKVERAIDGVTDETGTYKIELK 89
+VV+GRV+CDTC AGFET + YI GAKV++EC+ T + +G TD TGTY I +
Sbjct: 62 FVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIPVN 121
Query: 90 DSHEEDICEVVLVHSPLANCSEIEAERDRARVLLTRNVGICDNLRLANPLGYLKDIPLPI 149
D HE ++CE VLV SP A C +I A R+RA V LT N G+ N+RLAN LG+ KD PL
Sbjct: 122 DEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALGFQKDAPLAA 181
Query: 150 CGALLKQFDLADD 162
C +LK ++ DD
Sbjct: 182 CAQILKMYEEVDD 194
>Os06g0556600 Similar to Pollen allergen Phl p 11
Length = 175
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 26 DAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHFGTDKVERAIDGVTDETGTYK 85
D +VV GRVYCD CRAGFETNV++ I GA V +EC+H+G + + TDE G YK
Sbjct: 34 DPGGFVVTGRVYCDPCRAGFETNVSKSIPGATVSVECRHYGAGRESLKAEATTDEKGWYK 93
Query: 86 IELKDSHEEDICEVVLVHSPLANCSEIEAERDRARVLLTRNVGICDN-LRLANPLGYLKD 144
+E+ H+E+ICEVVL S CSE E RDR+RV LT N G+ N +R ANP+ + +
Sbjct: 94 VEIDQDHQEEICEVVLDKSSDPACSETEKTRDRSRVPLTSNNGLKQNGIRYANPIAFFRK 153
Query: 145 IPLPICGALLKQFDLAD 161
PL CG++L+++DL D
Sbjct: 154 EPLADCGSILQKYDLKD 170
>Os07g0590500 Pollen Ole e 1 allergen and extensin domain containing protein
Length = 168
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 83/123 (67%), Gaps = 5/123 (4%)
Query: 28 PDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRLECKHF--GTDKVERAIDGVTDETGTYK 85
D+ V+G VYCDTCRAGF TNVT I+ A+VRLEC+H+ + VER+ +G TD TG Y+
Sbjct: 27 SDFFVEGEVYCDTCRAGFVTNVTTAIQAARVRLECRHYMSASGSVERSAEGTTDATGHYR 86
Query: 86 IEL---KDSHEEDICEVVLVHSPLANCSEIEAERDRARVLLTRNVGICDNLRLANPLGYL 142
+EL + E +C V L+ SP+ C E+E RDRA V L ++VG+ +R ANPLG+L
Sbjct: 87 MELVEVDNRGAELVCAVALLSSPVTECHEMEVGRDRAPVTLVQDVGLATMVRRANPLGFL 146
Query: 143 KDI 145
+ +
Sbjct: 147 QTM 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,393,033
Number of extensions: 207987
Number of successful extensions: 448
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 5
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)