BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0362300 Os10g0362300|AK121000
(608 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0362300 Similar to Histidine kinase 3 1037 0.0
Os01g0923700 Similar to Histidine kinase-like protein 331 9e-91
Os12g0454800 Similar to Histidine kinase 325 4e-89
Os07g0576700 151 2e-36
>Os10g0362300 Similar to Histidine kinase 3
Length = 608
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/545 (91%), Positives = 498/545 (91%)
Query: 64 AAQFNXXXXXXXXXXXXXXXPERECICKSGTINDDNPAHSMPDMSNCRLKNKPSGGNQNR 123
AAQFN PERECICKSGTINDDNPAHSMPDMSNCRLKNKPSGGNQNR
Sbjct: 64 AAQFNLSMSKLQALASLLSSPERECICKSGTINDDNPAHSMPDMSNCRLKNKPSGGNQNR 123
Query: 124 LDNVIIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFSLSAS 183
LDNVIIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFSLSAS
Sbjct: 124 LDNVIIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFSLSAS 183
Query: 184 LGXXXXXXXXXXFKRGKQANELCQHEKLLQTPSVKISRKWSKRAXXXXXXXXXCSSVWIF 243
LG FKRGKQANELCQHEKLLQTPSVKISRKWSKRA CSSVWIF
Sbjct: 184 LGIVVILVVITIFKRGKQANELCQHEKLLQTPSVKISRKWSKRALLLGVLVGLCSSVWIF 243
Query: 244 SSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKT 303
SSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKT
Sbjct: 244 SSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKT 303
Query: 304 FEDFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQ 363
FEDFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQ
Sbjct: 304 FEDFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQ 363
Query: 364 PSPVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLG 423
PSPVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLG
Sbjct: 364 PSPVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLG 423
Query: 424 VVLTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDIT 483
VVLTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDIT
Sbjct: 424 VVLTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDIT 483
Query: 484 NHTYPTKMYDSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWXXXXXXXXXXXXX 543
NHTYPTKMYDSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPW
Sbjct: 484 NHTYPTKMYDSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIV 543
Query: 544 LLVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGLS 603
LLVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGLS
Sbjct: 544 LLVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGLS 603
Query: 604 FILCF 608
FILCF
Sbjct: 604 FILCF 608
>Os01g0923700 Similar to Histidine kinase-like protein
Length = 866
Score = 331 bits (849), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 167/308 (54%), Positives = 211/308 (68%), Gaps = 14/308 (4%)
Query: 303 TFEDFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNP--- 359
TF + RT FERPL SGVAYA++V H ERE FE++ GW IKKM + P
Sbjct: 2 TFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPG 61
Query: 360 -----EKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPF 414
E +P+ +EYAPVIF+Q+ KH+IS DM+SG EDRDNILR+R +GKG LTAPF
Sbjct: 62 DAAVAEIREPA---EEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPF 118
Query: 415 PLLKSNHLGVVLTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQK 474
LL +N LGV+LT+TVYKY+LP A P ERI+A +GYLG FD+ +LVE+LL+QLAS++
Sbjct: 119 KLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQES 177
Query: 475 IVVRLYDITNHTYPTKMYDSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWXXXX 534
I+V +YD TN + P MY D S H+S ++FGDP+RKH MHCRF+ P PW
Sbjct: 178 IMVNVYDTTNES-PISMYGDDT-GSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAIT 235
Query: 535 XXXXXXXXXLLVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRT 594
LL G+I AT++ + + ED++ M +LK RAE ADVAKSQFLATVSHEIRT
Sbjct: 236 SSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRT 295
Query: 595 PMNGVLGL 602
PMNGVLG+
Sbjct: 296 PMNGVLGM 303
>Os12g0454800 Similar to Histidine kinase
Length = 948
Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/356 (47%), Positives = 219/356 (61%), Gaps = 29/356 (8%)
Query: 237 CS--SVWIFSSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGK 294
CS S+WI S M + R L MCDERAR+LQDQ VSMNH+ ALAILVSTFHH K
Sbjct: 10 CSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAILVSTFHHSK 69
Query: 295 NPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLV 354
+PSAIDQ TF + RT FERPL SG+AYA +V HSERELFE++ W I+ M +
Sbjct: 70 SPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAMNFSSK--- 126
Query: 355 HDYNPEKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPF 414
P +EYAPVIF+Q+ KH++S+DM+SG EDR N+LR+R +GK LTAPF
Sbjct: 127 ----------RPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLTAPF 176
Query: 415 PLLKSNHLGVVLTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQK 474
LL + +GVVLT+ VYK +LP +AT +RI++++GYLG FD+ V++LLE+LA K+
Sbjct: 177 QLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEP 235
Query: 475 IVVRLYDITNHTYPTKMYDSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWXXXX 534
+ V +YD T + S+ AS H+S +DFGDP RKH MHCRF P PW
Sbjct: 236 MTVNIYDTTGESMIRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGPPWPWLAVA 295
Query: 535 XXXXXXXXXLLVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADV---AKSQFLAT 587
LLVGYI + T + + ED Y +A D+ AK +F AT
Sbjct: 296 SSYGTLVISLLVGYIFHFTDKWIAKVEDGY----------KATDMQMPAKDEFAAT 341
>Os07g0576700
Length = 161
Score = 151 bits (381), Expect = 2e-36, Method: Composition-based stats.
Identities = 74/123 (60%), Positives = 91/123 (73%), Gaps = 14/123 (11%)
Query: 256 ENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFER 315
E L +C+ERARMLQDQF VS+NHVHALAILV TFH+ K+P A+DQ TF + ART+FER
Sbjct: 37 EALVCICEERARMLQDQFAVSVNHVHALAILVVTFHYDKHPPALDQDTFAVYVARTSFER 96
Query: 316 PLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVI 375
PL+SGVAYA +V+H++RE FE++ GW IK M+ E PSP QDEYAPVI
Sbjct: 97 PLLSGVAYAQRVVHADRESFERQQGWIIKTMKHE--------------PSPAQDEYAPVI 142
Query: 376 FSQ 378
+SQ
Sbjct: 143 YSQ 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,855,739
Number of extensions: 654914
Number of successful extensions: 1305
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1299
Number of HSP's successfully gapped: 4
Length of query: 608
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 501
Effective length of database: 11,448,903
Effective search space: 5735900403
Effective search space used: 5735900403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)