Os10g0362300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidine kinase 3.
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Os10g0362300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidine kinase 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.34 | 0.371 | 12.2 | 0.634 | 1.96 | -0.327 | 0.209 | 5.98 | 0.516 | 7.47 | 29.59 | 1200 | -- | -- |
| 64.44 | 0.374 | 12.4 | -0.392 | 1.99 | 0.361 | 0.256 | -- | 0.499 | 7.41 | 30.5 | 2543 | -- | -- |
| 62.46 | 0.368 | 12.2 | 0.638 | 1.96 | -0.329 | -- | 6 | 0.514 | 7.47 | 29.64 | 1201 | -- | -- |
| 64.53 | 0.374 | 12.4 | -0.393 | 1.98 | 0.362 | -- | -- | 0.5 | 7.44 | 30.3 | 2548 | -- | -- |
| 265.42 | 0.759 | 12.2 | 1.64 | -- | -0.945 | -- | 11.3 | 0.545 | -- | 29.74 | 1309 | -- | -- |
| 69.64 | 0.391 | 12.4 | -0.307 | 1.97 | -- | 0.215 | -- | 0.432 | 7.36 | -- | -- | -- | -- |
| 69.76 | 0.391 | 12.4 | -0.302 | 1.97 | -- | -- | -- | 0.431 | 7.37 | -- | -- | -- | -- |
| 263.35 | 0.756 | 12.4 | -0.421 | -- | 0.425 | -- | -- | 0.419 | -- | 34 | 7084 | -- | -- |
| 68.48 | 0.385 | 12.3 | -- | 1.98 | 0.309 | -- | -- | 0.531 | 7.43 | 30.71 | 2533 | -- | -- |
| 277.01 | 0.778 | 12.4 | -0.27 | -- | -- | -- | -- | 0.464 | -- | -- | -- | -- | -- |
| 72.17 | 0.397 | 12.4 | -- | 1.97 | -- | -- | -- | 0.465 | 7.38 | -- | -- | -- | -- |
| 267.51 | 0.762 | 12.4 | -- | -- | 0.39 | -- | -- | 0.439 | -- | 33.98 | 7094 | -- | -- |
| 278.93 | 0.78 | 12.4 | -- | -- | -- | -- | -- | 0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.67 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 3 | 60.15 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 4 | 60.23 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 5 | 60.24 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 8 | 60.53 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 10 | 60.67 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 17 | 60.89 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 20 | 60.98 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 21 | 61.01 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 25 | 61.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 27 | 61.08 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 31 | 61.13 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 36 | 61.20 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 45 | 61.24 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 55 | 61.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 61 | 61.35 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 63 | 61.38 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 64 | 61.38 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 65 | 61.38 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 81 | 61.45 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 2 | 9 |
| 83 | 61.46 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 93 | 61.48 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 94 | 61.48 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 103 | 61.48 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 104 | 61.49 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 111 | 61.50 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 2 | 9 |
| 117 | 61.51 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 134 | 61.54 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 146 | 61.56 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 12 |
| 152 | 61.57 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 189 | 61.62 | wind | 1.0 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 230 | 61.67 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 295 | 61.76 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 297 | 61.76 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 317 | 61.78 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 346 | 61.81 | wind | 1.0 | 4320 | > th | dose independent | rect. | 1 | 5 |
| 390 | 61.83 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 407 | 61.84 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 422 | 61.86 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 430 | 61.87 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 447 | 61.87 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 476 | 61.90 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 517 | 61.93 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 522 | 61.93 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 594 | 61.98 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 632 | 62.02 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 658 | 62.05 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 22 |
| 659 | 62.05 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 756 | 62.20 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 18 |
| 758 | 62.20 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 765 | 62.22 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 782 | 62.23 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 884 | 62.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 885 | 62.39 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 911 | 62.42 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 914 | 62.43 | wind | 7.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 915 | 62.43 | wind | 1.0 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 941 | 62.46 | wind | 7.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 980 | 62.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 6 |