Os01g0923700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidine kinase-like protein.
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Os01g0923700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidine kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.31 | 0.222 | 11.8 | 0.821 | 0.839 | 0.358 | -0.0407 | -0.161 | 0.418 | 21.6 | 48.1 | 36 | -- | -- |
| 22.34 | 0.22 | 11.8 | 0.82 | 0.833 | 0.376 | -0.131 | -- | 0.417 | 21.6 | 50.47 | 35 | -- | -- |
| 22.31 | 0.22 | 11.8 | 0.821 | 0.841 | 0.362 | -- | -0.185 | 0.418 | 21.6 | 50.06 | 35 | -- | -- |
| 22.41 | 0.221 | 11.8 | 0.825 | 0.84 | 0.366 | -- | -- | 0.418 | 21.6 | 50.52 | 35 | -- | -- |
| 48.01 | 0.323 | 11.8 | 0.833 | -- | 1.11 | -- | -0.173 | 0.409 | -- | 65.06 | 15 | -- | -- |
| 24.28 | 0.231 | 11.8 | 0.816 | 1.03 | -- | -0.113 | -- | 0.403 | 22.2 | -- | -- | -- | -- |
| 24.34 | 0.231 | 11.8 | 0.82 | 1.03 | -- | -- | -- | 0.403 | 22.2 | -- | -- | -- | -- |
| 32.56 | 0.267 | 11.8 | 0.82 | -- | 0.743 | -- | -- | 0.425 | -- | 6.17 | 11 | -- | -- |
| 40.17 | 0.295 | 11.8 | -- | 0.851 | 0.405 | -- | -- | 0.323 | 21.7 | 79.39 | 49 | -- | -- |
| 88.5 | 0.44 | 11.8 | 0.834 | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
| 42.06 | 0.303 | 11.8 | -- | 1.03 | -- | -- | -- | 0.311 | 22.2 | -- | -- | -- | -- |
| 50.31 | 0.331 | 11.8 | -- | -- | 0.747 | -- | -- | 0.334 | -- | 6.17 | 11 | -- | -- |
| 106.87 | 0.483 | 11.8 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.45 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 7 | 13 |
| 8 | 21.12 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 22 |
| 10 | 21.20 | radiation | 40.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 24 | 21.34 | radiation | 10.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 29 | 21.39 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 11 |
| 30 | 21.39 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 13 |
| 39 | 21.47 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 11 |
| 40 | 21.47 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 41 | 21.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 50 | 21.52 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 13 |
| 58 | 21.58 | radiation | 10.0 | 10 | < th | dose independent | rect. | 20 | 11 |
| 63 | 21.60 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 11 |
| 65 | 21.60 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 11 |
| 66 | 21.60 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 11 |
| 69 | 21.60 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 11 |
| 73 | 21.60 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 13 |
| 75 | 21.60 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 76 | 21.60 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 13 |
| 78 | 21.60 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 81 | 21.61 | humidity | 80.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 83 | 21.63 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 87 | 21.64 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 93 | 21.66 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 9 | 22 |
| 109 | 21.68 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 112 | 21.69 | humidity | 80.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 131 | 21.71 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 134 | 21.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 138 | 21.71 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 143 | 21.71 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 145 | 21.71 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 160 | 21.73 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 162 | 21.74 | humidity | 80.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 168 | 21.74 | radiation | 30.0 | 30 | < th | dose dependent | sin | 20 | NA |
| 176 | 21.76 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 20 | 11 |
| 180 | 21.77 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 7 | 22 |
| 192 | 21.81 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 193 | 21.81 | humidity | 80.0 | 10 | < th | dose independent | rect. | 11 | 7 |
| 204 | 21.83 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 208 | 21.84 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 9 |
| 215 | 21.85 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 246 | 21.89 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 13 |
| 248 | 21.89 | radiation | 1.0 | 30 | > th | dose dependent | sin | 18 | NA |
| 270 | 21.91 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 291 | 21.93 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 339 | 21.98 | radiation | 1.0 | 30 | < th | dose independent | sin | 23 | NA |
| 368 | 22.00 | radiation | 1.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 369 | 22.00 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 372 | 22.01 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 9 |
| 381 | 22.01 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 383 | 22.01 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 11 |
| 397 | 22.02 | radiation | 1.0 | 30 | > th | dose independent | sin | 23 | NA |
| 398 | 22.02 | radiation | 10.0 | 720 | > th | dose independent | rect. | 11 | 2 |
| 410 | 22.03 | humidity | 80.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 432 | 22.04 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 7 |
| 436 | 22.04 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 11 |
| 456 | 22.05 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 22 |
| 468 | 22.06 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 477 | 22.07 | wind | 9.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 478 | 22.07 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 482 | 22.08 | temperature | 20.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 483 | 22.08 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 18 | 1 |
| 495 | 22.08 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 502 | 22.09 | wind | 1.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 504 | 22.09 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 522 | 22.09 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 11 | 19 |
| 524 | 22.10 | wind | 7.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 540 | 22.10 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 5 |
| 542 | 22.10 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 20 | 18 |
| 543 | 22.11 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 544 | 22.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 546 | 22.11 | humidity | 50.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 547 | 22.11 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 549 | 22.11 | radiation | 20.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 571 | 22.12 | humidity | 70.0 | 30 | > th | dose independent | rect. | 7 | 13 |
| 576 | 22.12 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 584 | 22.13 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 589 | 22.13 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 4 | NA |
| 607 | 22.14 | radiation | 10.0 | 30 | > th | dose independent | sin | 19 | NA |
| 615 | 22.14 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 622 | 22.14 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 23 | 17 |
| 633 | 22.15 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 22 |
| 668 | 22.16 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 673 | 22.16 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 674 | 22.16 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 11 | 6 |
| 698 | 22.17 | wind | 1.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 700 | 22.17 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 710 | 22.17 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 713 | 22.17 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 3 | 12 |
| 729 | 22.18 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 737 | 22.18 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 14 |
| 759 | 22.19 | humidity | 80.0 | 270 | > th | dose independent | sin | 3 | NA |
| 769 | 22.19 | atmosphere | 995.0 | 14400 | < th | dose dependent | no | NA | NA |
| 838 | 22.20 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 22 |
| 853 | 22.20 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 855 | 22.20 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 871 | 22.21 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 887 | 22.21 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 888 | 22.21 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 906 | 22.22 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 915 | 22.23 | humidity | 80.0 | 270 | < th | dose independent | sin | 5 | NA |
| 916 | 22.23 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 917 | 22.23 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 918 | 22.23 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 2 |
| 919 | 22.23 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 5 |
| 931 | 22.23 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 955 | 22.24 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 959 | 22.24 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 15 |