Os07g0576700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0576700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.27 | 0.362 | 11.6 | -0.625 | 1.62 | -0.83 | 0.639 | 1.11 | -0.131 | 2.34 | 20.52 | 1577 | -- | -- |
| 58.81 | 0.357 | 11.6 | -0.833 | 1.63 | -0.788 | 0.674 | -- | -0.141 | 2.38 | 20.53 | 7381 | -- | -- |
| 60.68 | 0.363 | 11.6 | -0.648 | 1.6 | -0.826 | -- | 1.15 | -0.143 | 2.33 | 21.04 | 1629 | -- | -- |
| 60.53 | 0.362 | 11.6 | -0.834 | 1.63 | -0.792 | -- | -- | -0.14 | 2.37 | 20.09 | 7398 | -- | -- |
| 118.38 | 0.507 | 11.5 | -0.396 | -- | -2.37 | -- | 3.72 | -0.0108 | -- | 24.24 | 12 | -- | -- |
| 78.65 | 0.416 | 11.6 | -1.24 | 1.6 | -- | 0.619 | -- | -0.405 | 2.38 | -- | -- | -- | -- |
| 80.05 | 0.419 | 11.6 | -1.26 | 1.61 | -- | -- | -- | -0.408 | 2.38 | -- | -- | -- | -- |
| 122.31 | 0.515 | 11.6 | -0.826 | -- | -2.1 | -- | -- | -0.0702 | -- | 23.1 | 12 | -- | -- |
| 65.41 | 0.377 | 11.5 | -- | 1.62 | -1.28 | -- | -- | 0.104 | 2.32 | 12.13 | 36669 | -- | -- |
| 232.54 | 0.713 | 11.6 | -1.19 | -- | -- | -- | -- | -0.369 | -- | -- | -- | -- | -- |
| 121.78 | 0.516 | 11.6 | -- | 1.58 | -- | -- | -- | -0.268 | 2.37 | -- | -- | -- | -- |
| 137.79 | 0.547 | 11.5 | -- | -- | -2.32 | -- | -- | 0.0893 | -- | 20.75 | 18 | -- | -- |
| 269.92 | 0.767 | 11.6 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.59 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 2 | 54.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 18 | 54.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 21 | 54.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 27 | 54.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 61 | 55.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 77 | 55.58 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 78 | 55.58 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 149 | 56.09 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 160 | 56.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 208 | 56.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 230 | 56.70 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 232 | 56.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 252 | 56.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 11 |
| 258 | 56.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 260 | 56.88 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 263 | 56.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 275 | 56.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 294 | 57.08 | humidity | 90 | 43200 | > th | dose dependent | sin | 18 | NA |
| 297 | 57.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 312 | 57.15 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 320 | 57.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 321 | 57.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 322 | 57.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 325 | 57.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 327 | 57.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 431 | 57.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 435 | 57.49 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 452 | 57.53 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 462 | 57.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 513 | 57.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 524 | 57.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 529 | 57.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 580 | 57.74 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 22 |
| 585 | 57.75 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 589 | 57.75 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 599 | 57.77 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 609 | 57.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 621 | 57.80 | humidity | 90 | 43200 | > th | dose independent | sin | 18 | NA |
| 637 | 57.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 638 | 57.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 641 | 57.82 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 642 | 57.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 658 | 57.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 669 | 57.85 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 682 | 57.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 725 | 57.91 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 764 | 57.94 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 783 | 57.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 797 | 57.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 816 | 57.97 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 823 | 57.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 834 | 57.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 850 | 58.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 858 | 58.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 864 | 58.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 952 | 58.05 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |