BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0576700 Os07g0576700|Os07g0576700
         (161 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0576700                                                      263   4e-71
Os10g0362300  Similar to Histidine kinase 3                       147   3e-36
Os12g0454800  Similar to Histidine kinase                         135   9e-33
Os01g0923700  Similar to Histidine kinase-like protein             76   1e-14

>Os07g0576700 
          Length = 161

 Score =  263 bits (672), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 131/161 (81%)

Query: 1   MVKLSTXXXXXXXXXXXXXXXGLHWRFRRPALHKAEEALVCICEERARMLQDQFAVSVNH 60
           MVKLST               GLHWRFRRPALHKAEEALVCICEERARMLQDQFAVSVNH
Sbjct: 1   MVKLSTVAVVAWVLASAALWAGLHWRFRRPALHKAEEALVCICEERARMLQDQFAVSVNH 60

Query: 61  VHALAILVVTFHYDKHPPALDQDTFAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQ 120
           VHALAILVVTFHYDKHPPALDQDTFAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQ
Sbjct: 61  VHALAILVVTFHYDKHPPALDQDTFAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQ 120

Query: 121 GWIIKTMKHEPSPAQDEYAPVIYXXXXXXXXXXXXXXXGES 161
           GWIIKTMKHEPSPAQDEYAPVIY               GES
Sbjct: 121 GWIIKTMKHEPSPAQDEYAPVIYSQPPRRPSPTSRKRRGES 161



>Os10g0362300 Similar to Histidine kinase 3
          Length = 608

 Score =  147 bits (372), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 14/121 (11%)

Query: 37  EALVCICEERARMLQDQFAVSVNHVHALAILVVTFHYDKHPPALDQDTFAVYVARTSFER 96
           E L  +C+ERARMLQDQF VS+NHVHALAILV TFH+ K+P A+DQ TF  + ART+FER
Sbjct: 256 ENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFER 315

Query: 97  PLLSGVAYAQRVVHADRESFERQQGWIIKTMKHE--------------PSPAQDEYAPVI 142
           PL+SGVAYA +V+H++RE FE++ GW IK M+ E              PSP QDEYAPVI
Sbjct: 316 PLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVI 375

Query: 143 Y 143
           +
Sbjct: 376 F 376



>Os12g0454800 Similar to Histidine kinase
          Length = 948

 Score =  135 bits (341), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 1/118 (0%)

Query: 27  FRRPALHKAEEALVCICEERARMLQDQFAVSVNHVHALAILVVTFHYDKHPPALDQDTFA 86
            R  A       L  +C+ERAR+LQDQ  VS+NH+ ALAILV TFH+ K P A+DQ TFA
Sbjct: 21  MRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAILVSTFHHSKSPSAIDQTTFA 80

Query: 87  VYVARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKTMKHEPS-PAQDEYAPVIY 143
            YV RT+FERPL SG+AYA RV H++RE FERQQ W I+ M      P  +EYAPVI+
Sbjct: 81  RYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAMNFSSKRPRAEEYAPVIF 138



>Os01g0923700 Similar to Histidine kinase-like protein
          Length = 866

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 46/79 (58%), Gaps = 19/79 (24%)

Query: 84  TFAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKTM-----KHEPSPA---- 134
           TFA Y  RT+FERPL SGVAYA RV H +RE FERQQGW IK M     K + SP     
Sbjct: 2   TFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPG 61

Query: 135 ----------QDEYAPVIY 143
                      +EYAPVI+
Sbjct: 62  DAAVAEIREPAEEYAPVIF 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,371,193
Number of extensions: 150484
Number of successful extensions: 361
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 4
Length of query: 161
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 68
Effective length of database: 12,179,899
Effective search space: 828233132
Effective search space used: 828233132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)