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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0454800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histidine kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.45 (0.0463) R2 : 0.397
β1 : -0.915 (0.173) R2dD : 0.0404 R2D : -0.00109
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.55 (0.154) R2dE : 0.383 R2E : 0.346
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.168 (0.1) R2dN8 : 0.00496 R2N8 : 0.0189
σ : 0.864
deviance : 343.99
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24
memory length : 920
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.62
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
326.63 0.849 5.53 -2.04 0.539 2.78 0.658 -6.76 0.202 2.89 25.79 978 7.6 --
334.1 0.851 5.4 -0.861 0.548 2.14 0.572 -- 0.372 3.21 25.48 978 8.27 --
327.9 0.843 5.52 -1.9 0.544 2.71 -- -5.83 0.214 2.71 25.73 979 7.75 --
333.87 0.851 5.41 -0.848 0.547 2.14 -- -- 0.353 2.73 25.4 976 8.35 --
338.16 0.856 5.54 -1.86 -- 3.02 -- -5.55 0.0667 -- 24.95 938 7.9 --
464.7 1.01 5.39 -0.336 1.17 -- 0.856 -- 0.426 2.44 -- -- -- --
467.33 1.01 5.39 -0.359 1.17 -- -- -- 0.421 2.37 -- -- -- --
343.99 0.864 5.45 -0.915 -- 2.55 -- -- 0.168 -- 24 920 8.62 --
351.66 0.873 5.38 -- 0.572 2.01 -- -- 0.454 2.66 25.41 957 7.96 --
548.78 1.09 5.38 -0.309 -- -- -- -- 0.45 -- -- -- -- --
470.72 1.01 5.38 -- 1.17 -- -- -- 0.461 2.36 -- -- -- --
364.83 0.89 5.41 -- -- 2.41 -- -- 0.322 -- 24.37 909 8.15 --
551.3 1.1 5.38 -- -- -- -- -- 0.484 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.88 temperature 25 720 > th dose dependent rect. 18 5
2 343.42 temperature 25 720 > th dose dependent rect. 18 14
15 348.30 temperature 25 720 > th dose dependent sin 12 NA
42 353.28 humidity 70 720 > th dose independent rect. 18 9
47 353.89 temperature 25 1440 > th dose dependent rect. 15 2
51 354.19 temperature 25 1440 > th dose dependent rect. 13 10
68 355.11 temperature 25 1440 > th dose dependent rect. 13 19
70 355.20 temperature 25 1440 > th dose dependent rect. 13 5
122 356.42 humidity 70 720 < th dose independent rect. 18 14
140 357.32 humidity 70 720 < th dose independent rect. 18 2
155 357.42 humidity 50 1440 < th dose independent rect. 16 1
164 357.64 humidity 50 1440 < th dose dependent rect. 16 1
190 358.90 humidity 70 720 > th dose independent rect. 18 2
198 359.37 humidity 70 720 < th dose dependent rect. 18 14
214 359.41 temperature 30 720 > th dose independent rect. 18 1
255 359.83 wind 5 43200 > th dose dependent rect. 13 1
295 360.50 humidity 70 720 < th dose dependent rect. 18 2
315 360.88 temperature 30 1440 > th dose independent sin 13 NA
345 361.30 temperature 30 1440 < th dose independent sin 13 NA
381 361.74 radiation 30 14400 > th dose independent rect. 16 1
398 361.84 humidity 50 1440 > th dose independent rect. 16 1
414 362.07 temperature 30 720 < th dose independent rect. 17 2
420 362.20 temperature 30 1440 > th dose independent rect. 13 6
458 362.52 radiation 30 1440 > th dose independent rect. 7 1
492 362.65 radiation 40 14400 > th dose dependent rect. 15 1
525 362.71 temperature 30 1440 < th dose independent rect. 13 16
526 362.71 temperature 30 1440 < th dose independent rect. 13 18
528 362.73 temperature 30 1440 < th dose independent rect. 13 14
533 362.77 temperature 30 1440 < th dose independent rect. 13 12
536 362.79 temperature 30 1440 < th dose independent rect. 13 6
561 362.85 temperature 30 1440 > th dose independent rect. 13 21
566 362.91 temperature 25 1440 > th dose dependent rect. 6 17
588 363.02 temperature 30 1440 < th dose independent rect. 13 21
591 363.04 temperature 30 1440 > th dose dependent no NA NA
689 363.16 wind 5 43200 > th dose dependent rect. 12 3
693 363.21 temperature 30 1440 > th dose independent rect. 15 4
714 363.30 temperature 30 1440 > th dose independent rect. 9 10
736 363.35 temperature 30 1440 > th dose dependent rect. 17 23
755 363.43 wind 9 43200 > th dose dependent rect. 13 17
820 363.68 temperature 30 1440 < th dose independent rect. 9 22
822 363.69 temperature 30 1440 < th dose independent rect. 9 20
823 363.70 wind 5 43200 > th dose dependent rect. 11 5
824 363.71 temperature 30 1440 < th dose independent rect. 9 18
828 363.73 temperature 30 1440 < th dose independent rect. 9 10
831 363.74 temperature 30 1440 < th dose independent rect. 9 16
872 363.89 wind 9 43200 > th dose dependent rect. 13 12
878 363.92 wind 9 43200 > th dose dependent rect. 13 14
879 363.93 temperature 30 720 < th dose independent rect. 17 9
913 364.04 temperature 30 720 < th dose dependent rect. 18 1
944 364.17 temperature 30 1440 < th dose independent rect. 18 22
952 364.20 temperature 30 1440 > th dose independent rect. 17 23