BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0576700 Os07g0576700|Os07g0576700
(161 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01830.2 | chr2:363332-368016 REVERSE LENGTH=1081 171 1e-43
AT1G27320.1 | chr1:9487780-9492027 FORWARD LENGTH=1037 159 9e-40
AT5G35750.1 | chr5:13911743-13916337 REVERSE LENGTH=1177 147 2e-36
>AT2G01830.2 | chr2:363332-368016 REVERSE LENGTH=1081
Length = 1080
Score = 171 bits (434), Expect = 1e-43, Method: Composition-based stats.
Identities = 79/111 (71%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 34 KAEEALVCICEERARMLQDQFAVSVNHVHALAILVVTFHYDKHPPALDQDTFAVYVARTS 93
+ EE LV +C++RARMLQDQF+VSVNHVHALAILV TFHY K+P A+DQ+TFA Y ART+
Sbjct: 156 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 215
Query: 94 FERPLLSGVAYAQRVVHADRESFERQQGWIIKTM-KHEPSPAQDEYAPVIY 143
FERPLLSGVAYA++VV+ +RE FERQ W+IKTM + EPSP +DEYAPVI+
Sbjct: 216 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIF 266
>AT1G27320.1 | chr1:9487780-9492027 FORWARD LENGTH=1037
Length = 1036
Score = 159 bits (401), Expect = 9e-40, Method: Composition-based stats.
Identities = 75/135 (55%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 25 WRFRRPALHKAEEALVCICEERARMLQDQFAVSVNHVHALAILVVTFHYDKHPPALDQDT 84
W F A+ K +E L +C+ERARMLQDQF VS+NHV A++IL+ TFH+ K P A+DQ T
Sbjct: 112 WYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRT 171
Query: 85 FAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKTMKH--------------- 129
F+ Y RTSFERPL SGVAYA RV+H++RE FERQQGW I+ M
Sbjct: 172 FSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEA 231
Query: 130 -EPSPAQDEYAPVIY 143
EPSP Q+EYAPVI+
Sbjct: 232 LEPSPVQEEYAPVIF 246
>AT5G35750.1 | chr5:13911743-13916337 REVERSE LENGTH=1177
Length = 1176
Score = 147 bits (371), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/133 (53%), Positives = 88/133 (66%), Gaps = 14/133 (10%)
Query: 25 WRFRRPALHKAEEALVCICEERARMLQDQFAVSVNHVHALAILVVTFHYDKHPPALDQDT 84
W + K E L +C+ERAR+LQDQF VS+NHVHAL+ILV TFH+ K P A+DQ T
Sbjct: 251 WDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHALSILVSTFHHGKIPSAIDQRT 310
Query: 85 FAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKTMKHE-------------- 130
F Y RT+FERPL SGVAYA +V H++RE FE++ GW IK M+ E
Sbjct: 311 FEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWAIKKMETEDQTVVQDCVPENFD 370
Query: 131 PSPAQDEYAPVIY 143
P+P QDEYAPVI+
Sbjct: 371 PAPIQDEYAPVIF 383
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,684,872
Number of extensions: 91345
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 3
Length of query: 161
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 70
Effective length of database: 8,611,713
Effective search space: 602819910
Effective search space used: 602819910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)