BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0206800 Os10g0206800|AK101612
(537 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0206800 Multi antimicrobial extrusion protein MatE fam... 927 0.0
Os03g0216700 Multi antimicrobial extrusion protein MatE fam... 498 e-141
Os01g0919100 428 e-120
Os12g0106600 Multi antimicrobial extrusion protein MatE fam... 313 3e-85
Os12g0156700 99 6e-21
Os05g0409600 92 1e-18
AK073429 80 4e-15
Os09g0548300 Conserved hypothetical protein 72 1e-12
Os02g0833100 Conserved hypothetical protein 68 2e-11
>Os10g0206800 Multi antimicrobial extrusion protein MatE family protein
Length = 537
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/537 (87%), Positives = 468/537 (87%)
Query: 1 MNGEXXXXXXXXXXXXMNDAVPGHRHHHPLSVFLRDARLAFRWDELGREIMGIAVPGALA 60
MNGE MNDAVPGHRHHHPLSVFLRDARLAFRWDELGREIMGIAVPGALA
Sbjct: 1 MNGESLLDRSSSADAAMNDAVPGHRHHHPLSVFLRDARLAFRWDELGREIMGIAVPGALA 60
Query: 61 LMADPVASLVDTAFIGHIGPVELAAVGVSIAVFNQVSRIAIFPLVSVTTSFVAEEDATSS 120
LMADPVASLVDTAFIGHIGPVELAAVGVSIAVFNQVSRIAIFPLVSVTTSFVAEEDATSS
Sbjct: 61 LMADPVASLVDTAFIGHIGPVELAAVGVSIAVFNQVSRIAIFPLVSVTTSFVAEEDATSS 120
Query: 121 DREKYEINGENEFNVSDSEMEELVSHEEASAAPSKSSFETDSSDVKIEHKRKNIPSVSTX 180
DREKYEINGENEFNVSDSEMEELVSHEEASAAPSKSSFETDSSDVKIEHKRKNIPSVST
Sbjct: 121 DREKYEINGENEFNVSDSEMEELVSHEEASAAPSKSSFETDSSDVKIEHKRKNIPSVSTA 180
Query: 181 XXXXXXXXXXXXXXXXICAKPLLGYMGVKQGSAMLMPALKYLVVRSLGAPAVLLSLAMQG 240
ICAKPLLGYMGVKQGSAMLMPALKYLVVRSLGAPAVLLSLAMQG
Sbjct: 181 LLLGGVLGLLQALLLVICAKPLLGYMGVKQGSAMLMPALKYLVVRSLGAPAVLLSLAMQG 240
Query: 241 VFRGLKDTKTPLYATVAGDATNIVLDPIFMFVFQYGVSGAAIAHVISQYFIASIXXXXXX 300
VFRGLKDTKTPLYATVAGDATNIVLDPIFMFVFQYGVSGAAIAHVISQYFIASI
Sbjct: 241 VFRGLKDTKTPLYATVAGDATNIVLDPIFMFVFQYGVSGAAIAHVISQYFIASILLWRLR 300
Query: 301 XXXXXXPPSFKHMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQI 360
PPSFKHMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQI
Sbjct: 301 LHVDLLPPSFKHMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQI 360
Query: 361 WLASSLLADGLAFAGQAILASAFARQDHSKAAATAXXXXXXXXXXXXXXXXXXXXXXXXX 420
WLASSLLADGLAFAGQAILASAFARQDHSKAAATA
Sbjct: 361 WLASSLLADGLAFAGQAILASAFARQDHSKAAATASRILQLGLVLGLLLSIFLGIGLRLG 420
Query: 421 XXXFTDDQDVLHHIYLGIPFVSLTQPINALAFVFDGINYGASDFGYAAYSMILVAIVSII 480
FTDDQDVLHHIYLGIPFVSLTQPINALAFVFDGINYGASDFGYAAYSMILVAIVSII
Sbjct: 421 SRLFTDDQDVLHHIYLGIPFVSLTQPINALAFVFDGINYGASDFGYAAYSMILVAIVSII 480
Query: 481 FIVTLASYNGFVGIWIALTVYMSLRMLAGFLRIGTARGPWTFYAAQRMHSHEVVGLC 537
FIVTLASYNGFVGIWIALTVYMSLRMLAGFLRIGTARGPWTFYAAQRMHSHEVVGLC
Sbjct: 481 FIVTLASYNGFVGIWIALTVYMSLRMLAGFLRIGTARGPWTFYAAQRMHSHEVVGLC 537
>Os03g0216700 Multi antimicrobial extrusion protein MatE family protein
Length = 571
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 274/511 (53%), Positives = 333/511 (65%), Gaps = 20/511 (3%)
Query: 23 GHRHHHPLSVFLRDARLAFRWDELGREIMGIAVPGALALMADPVASLVDTAFIGHIGPVE 82
G L +F+ + R F+ DELG E++ IAVP +LAL ADP+ASLVDTAFIG +G VE
Sbjct: 67 GWPRRVGLYLFVMNIRSVFKLDELGSEVLRIAVPASLALAADPLASLVDTAFIGRLGSVE 126
Query: 83 LAAVGVSIAVFNQVSRIAIFPLVSVTTSFVAEEDA---------TSSDREKYE-INGE-N 131
+AAVGVSIA+FNQVS++ I+PLVSVTTSFVAEEDA +S D EK ++ E N
Sbjct: 127 IAAVGVSIAIFNQVSKVCIYPLVSVTTSFVAEEDAIISKCIEENSSQDLEKASPVDSETN 186
Query: 132 EFNVSDSEMEELVSHEEASAAPSKSSFETDSSDVKIEHKRKNIPSVSTXXXXXXXXXXXX 191
VS + E V+ S P++ + +D KRK IPSV++
Sbjct: 187 NLPVSGPDKVECVN----SCIPTECTNPSDQG-----CKRKYIPSVTSAVIVGSFLGLLQ 237
Query: 192 XXXXXICAKPLLGYMGVKQGSAMLMPALKYLVVRSLGAPAVLLSLAMQGVFRGLKDTKTP 251
AK +L MGVK S ML PA++YL +RSLGAPAVLLSLAMQGVFRG KDTKTP
Sbjct: 238 AVFLVFSAKFVLNIMGVKNDSPMLRPAVRYLTIRSLGAPAVLLSLAMQGVFRGFKDTKTP 297
Query: 252 LYATVAGDATNIVLDPIFMFVFQYGVSGAAIAHVISQYFIASIXXXXXXXXXXXXPPSFK 311
LYATV GDA NI+LDPI MFV GV+GAA+AHVISQY I I PPS K
Sbjct: 298 LYATVVGDAANIILDPILMFVCHMGVTGAAVAHVISQYLITMILLCRLIRQVDVIPPSLK 357
Query: 312 HMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQIWLASSLLADGL 371
++F RFL GFLLLARV+A T CVTL++S+AAR G MAAFQIC Q+WLA+SLLADGL
Sbjct: 358 SLKFGRFLGCGFLLLARVVAVTFCVTLASSLAARHGPTIMAAFQICCQLWLATSLLADGL 417
Query: 372 AFAGQAILASAFARQDHSKAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTDDQDVL 431
A AGQA+LASAFA+ D K FT D DV+
Sbjct: 418 AVAGQAVLASAFAKNDKGKVVVATSRVLQLSIVLGMGLTVVLGVGMKFGAGIFTKDIDVI 477
Query: 432 HHIYLGIPFVSLTQPINALAFVFDGINYGASDFGYAAYSMILVAIVSIIFIVTLASYNGF 491
I+ GIPFV+ TQ IN+LAFVFDGIN+GASD+ Y+AYSM+ VA +SI +V L+++NGF
Sbjct: 478 DVIHKGIPFVAGTQTINSLAFVFDGINFGASDYTYSAYSMVGVAAISIPCLVYLSAHNGF 537
Query: 492 VGIWIALTVYMSLRMLAGFLRIGTARGPWTF 522
+GIWIALT+YMSLR +A R+G ARGPW F
Sbjct: 538 IGIWIALTIYMSLRTIASTWRMGAARGPWVF 568
>Os01g0919100
Length = 566
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/521 (47%), Positives = 307/521 (58%), Gaps = 53/521 (10%)
Query: 23 GHRHHHPLSVFLRDARLAFRWDELGREIMGIAVPGALALMADPVASLVDTAFIGHIGPVE 82
G L +F+ +AR A R DELG E++ IAVP +LAL ADP+ASL+DTAFIG IG VE
Sbjct: 75 GGARRTGLHLFVLNARSALRLDELGAEVLRIAVPASLALTADPLASLIDTAFIGRIGSVE 134
Query: 83 LAAVGVSIAVFNQVSRIAIFPLVSVTTSFVAEEDATSSDREKYEI-----------NGEN 131
+AAVGV+IAVFNQV ++ I+PLVSVTTSFVAEEDA S +G +
Sbjct: 135 IAAVGVAIAVFNQVMKVCIYPLVSVTTSFVAEEDAILSKGAAGADDDNDDGHDAKGHGAS 194
Query: 132 EFNVSDSEMEELVSHE-------EASAAPSKSSFETDSSDVKI---EHKRKNIPSVSTXX 181
V+D E +++V + E S A +++ + ++ + + +R+ +PSV++
Sbjct: 195 AAAVADPEKQQVVGVDSAETNGAEVSTAAVRTTDDKKAAAAGVGVGKCRRRFVPSVTSAL 254
Query: 182 XXXXXXXXXXXXXXXICAKPLLGYMGVKQGSAMLMPALKYLVVRSLGAPAVLLSLAMQGV 241
KPLL MGVK GS M++PAL+YLVVRSLGAPAVLLSLAMQGV
Sbjct: 255 IVGAFLGLLQAVFLVAAGKPLLRIMGVKPGSPMMIPALRYLVVRSLGAPAVLLSLAMQGV 314
Query: 242 FRGLKDTKTPLYATVAGDATNIVLDPIFMFVFQYGVSGAAIAHVISQYFIASIXXXXXXX 301
FRG KDTKTPLYATV GD NI LDPI +F ++GV GAAIAHVISQY I I
Sbjct: 315 FRGFKDTKTPLYATVTGDLANIALDPILIFTCRFGVVGAAIAHVISQYLITLIMLCKLVR 374
Query: 302 XXXXXPPSFKHMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQIW 361
P S K ++F RFL GFLLLARV+A T CVTL+AS+AAR G+ MAAFQIC Q+W
Sbjct: 375 KVDVIPSSLKSLKFRRFLGCGFLLLARVVAVTFCVTLAASLAARHGATAMAAFQICAQVW 434
Query: 362 LASSLLADGLAFAGQAILASAFARQDHSKAAATAXXXXXXXXXXXXXXXXXXXXXXXXXX 421
LASSLLADGLA AGQA+LASAFA++DH K A T
Sbjct: 435 LASSLLADGLAVAGQALLASAFAKKDHYKVAVTTARVLQLAVVLGVGLTAFLAAGMWFGA 494
Query: 422 XXFTDDQDVLHHIYLGIPFVSLTQPINALAFVFDGINYGASDFGYAAYSMILVAIVSIIF 481
FT D V+ I+ G+P + VA V+I
Sbjct: 495 GVFTSDAAVISTIHRGVP--------------------------------VGVAAVTIPC 522
Query: 482 IVTLASYNGFVGIWIALTVYMSLRMLAGFLRIGTARGPWTF 522
+V L+S+ GFVGIWIAL +YMS+R A R+G ARGPW F
Sbjct: 523 LVLLSSHGGFVGIWIALAIYMSVRAFASTWRMGAARGPWKF 563
>Os12g0106600 Multi antimicrobial extrusion protein MatE family protein
Length = 558
Score = 313 bits (801), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 199/483 (41%), Positives = 271/483 (56%), Gaps = 25/483 (5%)
Query: 38 RLAFRWDELGREIMGIAVPGALALMADPVASLVDTAFIGHIGPVELAAVGVSIAVFNQVS 97
R F DE+G EI+ IA+P LAL ADP+ +L+DTAF+GH+G ELAAVGVSI++FN VS
Sbjct: 93 RGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVS 152
Query: 98 RIAIFPLVSVTTSFVAEEDATSSDREKYEINGENEFNVSDSEMEELVSHEEASAAPSKSS 157
++ PL++VTTSFVAE+ A +D +V +S + E +S + A
Sbjct: 153 KLLNVPLLNVTTSFVAEQQAVDADYNS---------SVKNSHIGEEISISQEKAG----- 198
Query: 158 FETDSSDVKIEHKRKNIPSVSTXXXXXXXXXXXXXXXXXICAKPLLGYMGVKQGSAMLMP 217
+RK +P+VST + + LL +GV S M +P
Sbjct: 199 -----------EQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIP 247
Query: 218 ALKYLVVRSLGAPAVLLSLAMQGVFRGLKDTKTPLYATVAGDATNIVLDPIFMFVFQYGV 277
A ++L +R+ GAP V+++LA QG FRG DTKTPL+A VAG+ N +LD IF+F GV
Sbjct: 248 AEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGV 307
Query: 278 SGAAIAHVISQYFIASIXXXXXXXXXXXXPPSFKHMQFSRFLKNGFLLLARVIAATCCVT 337
SGAA+A V S+Y A I + R+LK+G LL+AR IA T
Sbjct: 308 SGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIRYLKSGALLIARTIAVVLTFT 367
Query: 338 LSASMAARLGSVPMAAFQICLQIWLASSLLADGLAFAGQAILASAFARQDHSKAAATAXX 397
+S S+AAR GSVPMA ++ICLQ+WL SLL D LA AGQA+LAS +A+ ++ KA
Sbjct: 368 VSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIVLYR 427
Query: 398 XXXXXXXXXXXXXXXXXXXXXXXXXXFTDDQDVLHHIYLGIPFVSLTQPINALAFVFDGI 457
FTDD VL G+ FV+++QPINA+AFV DG+
Sbjct: 428 VLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGL 487
Query: 458 NYGASDFGYAAYSMILVAIVSIIFIVTLASYNGFVGIWIALTVYMSLRMLAGFLRIGTAR 517
YG SDF + AYS + +S ++ A G G+W LT++MSLR +AGF R+G+
Sbjct: 488 YYGVSDFAFVAYSTLFAGAISSAVLLVAAPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKG 547
Query: 518 GPW 520
GPW
Sbjct: 548 GPW 550
>Os12g0156700
Length = 117
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 61/106 (57%)
Query: 351 MAAFQICLQIWLASSLLADGLAFAGQAILASAFARQDHSKAAATAXXXXXXXXXXXXXXX 410
MAAFQIC Q+WLA SLLADGLA AGQA+LAS FA++DH K A T
Sbjct: 1 MAAFQICAQVWLAMSLLADGLAIAGQALLASVFAKKDHYKVAVTTARMLQLTVVLGVGLT 60
Query: 411 XXXXXXXXXXXXXFTDDQDVLHHIYLGIPFVSLTQPINALAFVFDG 456
FT D V+ I+ G+PFV+ TQ IN LAFVFDG
Sbjct: 61 AFLAAGMWFGSGVFTSDTAVISTIHKGVPFVAGTQTINTLAFVFDG 106
>Os05g0409600
Length = 117
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 58/106 (54%)
Query: 351 MAAFQICLQIWLASSLLADGLAFAGQAILASAFARQDHSKAAATAXXXXXXXXXXXXXXX 410
MAAFQIC Q+WLA+SLLAD L AGQA+ AS FA++DH K A T
Sbjct: 1 MAAFQICAQVWLATSLLADDLTIAGQALFASVFAKKDHYKMAVTTARVLQLAVVLGVGLT 60
Query: 411 XXXXXXXXXXXXXFTDDQDVLHHIYLGIPFVSLTQPINALAFVFDG 456
FT D V+ I+ G+PFV+ Q IN LAFVFDG
Sbjct: 61 AFLATGMWFGSGVFTSDTAVISTIHKGVPFVAGMQTINTLAFVFDG 106
>AK073429
Length = 195
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 61/77 (79%)
Query: 41 FRWDELGREIMGIAVPGALALMADPVASLVDTAFIGHIGPVELAAVGVSIAVFNQVSRIA 100
F DE+G +I+ IA+P LAL A+P+ +LVDTAF+GH+G ELAAVGVSI++FN V ++
Sbjct: 111 FMVDEIGMDILTIALPAVLALAANPITALVDTAFVGHVGSTELAAVGVSISIFNLVCKLL 170
Query: 101 IFPLVSVTTSFVAEEDA 117
PL++VTTSFVAE+ A
Sbjct: 171 NVPLLNVTTSFVAEQQA 187
>Os09g0548300 Conserved hypothetical protein
Length = 98
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 307 PPSFKHMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQIWLASSL 366
PP + + F ++K+G +LL R ++ +TL +MAAR G++ MAA QICLQ+WLA SL
Sbjct: 22 PPKIEDLDFVGYIKSGGMLLGRTLSVLITMTLGTAMAARQGTIAMAAHQICLQVWLAVSL 81
Query: 367 LADGLAFAGQAILA 380
L+D LA + Q L+
Sbjct: 82 LSDALAVSAQVQLS 95
>Os02g0833100 Conserved hypothetical protein
Length = 106
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 5/82 (6%)
Query: 310 FKHMQFSRFLKN-GFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQIWLASSLLA 368
F H+ FLK G +LL R ++ +T+ SMAAR G MAA QICLQ+WLA SLLA
Sbjct: 1 FHHL----FLKCLGGMLLGRTLSILLTMTIGTSMAARQGPTAMAAHQICLQVWLAVSLLA 56
Query: 369 DGLAFAGQAILASAFARQDHSK 390
D LA + QA++AS++A D+ +
Sbjct: 57 DALAVSAQAMIASSYAILDYKR 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,771,706
Number of extensions: 467597
Number of successful extensions: 1862
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1850
Number of HSP's successfully gapped: 9
Length of query: 537
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 431
Effective length of database: 11,501,117
Effective search space: 4956981427
Effective search space used: 4956981427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)