Os10g0206800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os10g0206800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.48 | 0.218 | 10.9 | 0.23 | 1.03 | 0.288 | 0.149 | -1.04 | 0.215 | 6.49 | 29.21 | 196 | -- | -- |
| 22.7 | 0.222 | 10.9 | 0.0582 | 1.03 | 0.313 | -0.0443 | -- | 0.173 | 6.54 | 28.63 | 174 | -- | -- |
| 21.52 | 0.216 | 10.9 | 0.223 | 1.03 | 0.291 | -- | -0.99 | 0.211 | 6.51 | 29.24 | 175 | -- | -- |
| 22.7 | 0.222 | 10.9 | 0.0546 | 1.02 | 0.313 | -- | -- | 0.171 | 6.53 | 28.6 | 174 | -- | -- |
| 63.44 | 0.371 | 10.9 | 0.373 | -- | 1.26 | -- | -0.933 | 0.362 | -- | 33.22 | 359 | -- | -- |
| 24.04 | 0.23 | 10.9 | -0.0251 | 1.09 | -- | -0.0517 | -- | 0.105 | 6.3 | -- | -- | -- | -- |
| 24.04 | 0.23 | 10.9 | -0.0257 | 1.09 | -- | -- | -- | 0.105 | 6.3 | -- | -- | -- | -- |
| 64.07 | 0.373 | 10.9 | 0.269 | -- | 1.16 | -- | -- | 0.319 | -- | 31.72 | 352 | -- | -- |
| 22.77 | 0.222 | 10.9 | -- | 1.03 | 0.293 | -- | -- | 0.162 | 6.52 | 28.8 | 161 | -- | -- |
| 86.15 | 0.434 | 10.9 | 0.00357 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 24.06 | 0.229 | 10.9 | -- | 1.09 | -- | -- | -- | 0.108 | 6.3 | -- | -- | -- | -- |
| 65.77 | 0.378 | 10.9 | -- | -- | 1.08 | -- | -- | 0.274 | -- | 32.18 | 353 | -- | -- |
| 86.15 | 0.433 | 10.9 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.82 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 16.90 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 20 | 17.69 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 30 | 17.90 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 39 | 18.02 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 40 | 18.06 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 53 | 18.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 56 | 18.21 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 58 | 18.21 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 61 | 18.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 63 | 18.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 70 | 18.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 71 | 18.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 74 | 18.29 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 76 | 18.30 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 88 | 18.34 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 90 | 18.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 91 | 18.35 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 96 | 18.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 98 | 18.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 99 | 18.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 101 | 18.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 102 | 18.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 110 | 18.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 112 | 18.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 113 | 18.40 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 130 | 18.47 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 14 |
| 136 | 18.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 137 | 18.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 139 | 18.51 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 155 | 18.53 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 210 | 18.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 15 |
| 214 | 18.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 216 | 18.61 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 220 | 18.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 241 | 18.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 243 | 18.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 246 | 18.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 252 | 18.67 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 255 | 18.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 9 |
| 258 | 18.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 303 | 18.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 309 | 18.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 310 | 18.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 311 | 18.75 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 320 | 18.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 321 | 18.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 17 |
| 322 | 18.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 324 | 18.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 332 | 18.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 352 | 18.81 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 359 | 18.82 | humidity | 90.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 363 | 18.83 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 385 | 18.87 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 429 | 18.91 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 442 | 18.93 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 445 | 18.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 7 |
| 451 | 18.94 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 453 | 18.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 456 | 18.94 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 461 | 18.95 | radiation | 1.0 | 10 | > th | dose independent | sin | 9 | NA |
| 465 | 18.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 479 | 18.97 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 493 | 18.98 | radiation | 10.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 512 | 18.99 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 515 | 18.99 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 583 | 19.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 605 | 19.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 606 | 19.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 607 | 19.09 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 610 | 19.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 611 | 19.09 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 621 | 19.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 622 | 19.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 627 | 19.09 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 651 | 19.11 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 652 | 19.11 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 660 | 19.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 663 | 19.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 695 | 19.15 | radiation | 1.0 | 10 | < th | dose independent | sin | 9 | NA |
| 702 | 19.15 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 9 |
| 709 | 19.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 718 | 19.16 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 729 | 19.17 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 732 | 19.18 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 760 | 19.19 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 761 | 19.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 764 | 19.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 783 | 19.21 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 786 | 19.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 800 | 19.22 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 807 | 19.23 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 809 | 19.23 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 811 | 19.23 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 812 | 19.23 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 814 | 19.23 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 815 | 19.23 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 820 | 19.23 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 840 | 19.25 | humidity | 90.0 | 270 | < th | dose independent | sin | 3 | NA |
| 888 | 19.27 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 908 | 19.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 9 |
| 926 | 19.30 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 985 | 19.34 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 997 | 19.34 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |