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Os12g0106600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0173) R2 : 0.879
β1 : -1.22 (0.0635) R2dD : 0.102 R2D : 0.081
β2 : 1.7 (0.044) R2dC : 0.456 R2C : 0.636
β3 : -1.27 (0.0583) R2dE : 0.143 R2E : 0.305
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.309 (0.037) R2dN8 : 0.0244 R2N8 : 0.00631
σ : 0.324
deviance : 48.38
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_____
C
peak time of C : 13
E
wheather : radiation
threshold : 1.126
memory length : 233
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.49 0.32 10.9 -1.22 1.69 -1.38 -0.679 -0.714 -0.3 12.9 0.7213 257 20.6 --
47.15 0.32 10.9 -1.21 1.7 -1.33 -0.583 -- -0.3 12.9 0.8896 247 20.6 --
48.11 0.323 10.9 -1.23 1.69 -1.35 -- -0.548 -0.314 12.9 0.7631 246 20.4 --
48.38 0.324 10.9 -1.22 1.7 -1.27 -- -- -0.309 13 1.126 233 20.6 --
74.64 0.402 11 -1.17 -- -2.06 -- 0.279 -0.295 -- 9.818 205 4.5 --
74.46 0.405 10.9 -1.12 2.17 -- -0.26 -- -0.293 14.2 -- -- -- --
74.71 0.405 10.9 -1.13 2.17 -- -- -- -0.295 14.2 -- -- -- --
71.29 0.393 10.9 -1.09 -- -2.04 -- -- -0.316 -- 22.9 150 4.34 --
85.6 0.431 10.9 -- 1.73 -1.19 -- -- -0.177 13.1 2.233 196 20.7 --
356.88 0.883 10.9 -1.22 -- -- -- -- -0.347 -- -- -- -- --
108.38 0.487 10.9 -- 2.2 -- -- -- -0.169 14.2 -- -- -- --
105.1 0.477 10.9 -- -- -2.11 -- -- -0.188 -- 50.12 101 4.23 --
396.23 0.929 10.9 -- -- -- -- -- -0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.20 humidity 60.0 90 > th dose dependent rect. 3 4
4 43.82 precipitation 0.1 270 < th dose independent rect. 6 19
5 43.82 precipitation 0.1 270 < th dose dependent rect. 6 19
6 43.88 wind 9.0 90 < th dose independent rect. 7 20
8 43.89 precipitation 0.1 270 < th dose independent rect. 5 21
10 43.89 precipitation 0.1 270 < th dose dependent rect. 5 21
11 43.95 radiation 1.0 270 < th dose dependent rect. 1 18
12 44.11 wind 9.0 90 < th dose dependent rect. 3 4
13 44.13 humidity 50.0 270 > th dose dependent rect. 1 5
15 44.23 wind 9.0 90 < th dose independent rect. 3 4
16 44.23 temperature 10.0 90 > th dose independent rect. 3 4
18 44.23 temperature 30.0 90 < th dose independent rect. 3 4
19 44.23 humidity 50.0 90 > th dose independent rect. 3 4
21 44.23 atmosphere 995.0 90 > th dose independent rect. 3 4
22 44.23 atmosphere 1015.0 90 < th dose independent rect. 3 4
23 44.23 radiation 20.0 90 < th dose independent rect. 3 4
26 44.23 temperature 10.0 90 > th dose independent rect. 7 20
29 44.26 precipitation 0.1 90 < th dose independent rect. 3 4
30 44.26 precipitation 0.1 90 < th dose dependent rect. 3 4
33 44.35 radiation 40.0 90 < th dose dependent rect. 3 4
36 44.53 radiation 10.0 270 < th dose dependent rect. 1 5
40 44.56 radiation 10.0 270 < th dose independent rect. 1 5
43 44.63 temperature 10.0 270 > th dose independent rect. 1 5
45 44.63 temperature 30.0 270 < th dose independent rect. 1 5
46 44.63 humidity 50.0 270 > th dose independent rect. 1 5
49 44.63 atmosphere 995.0 270 > th dose independent rect. 1 5
50 44.63 atmosphere 1015.0 270 < th dose independent rect. 1 5
55 44.64 wind 9.0 270 < th dose independent rect. 1 5
56 44.65 precipitation 0.1 270 < th dose independent rect. 1 5
58 44.65 precipitation 0.1 270 < th dose dependent rect. 1 5
59 44.67 radiation 1.0 270 < th dose dependent rect. 2 3
60 44.70 radiation 1.0 270 < th dose independent rect. 2 3
79 44.73 temperature 10.0 270 > th dose independent rect. 5 21
80 44.75 wind 9.0 270 < th dose independent rect. 5 21
88 44.82 radiation 1.0 270 < th dose independent rect. 1 18
97 45.16 radiation 1.0 270 < th dose dependent rect. 1 10
100 45.18 radiation 1.0 270 < th dose independent rect. 1 10
112 45.33 temperature 10.0 270 > th dose dependent rect. 2 3
122 45.67 humidity 60.0 270 > th dose dependent rect. 3 1
124 45.69 temperature 10.0 270 > th dose dependent rect. 1 5
173 46.12 wind 9.0 270 < th dose dependent rect. 1 5
187 46.43 atmosphere 995.0 270 > th dose independent rect. 1 19
198 46.60 atmosphere 1015.0 270 < th dose independent rect. 24 21
199 46.60 temperature 10.0 270 > th dose dependent rect. 3 1
200 46.61 wind 9.0 270 < th dose independent rect. 3 1
201 46.61 temperature 10.0 270 > th dose independent rect. 3 1
203 46.61 temperature 30.0 270 < th dose independent rect. 3 1
204 46.61 humidity 50.0 270 > th dose independent rect. 3 1
207 46.61 atmosphere 995.0 270 > th dose independent rect. 3 1
208 46.61 atmosphere 1010.0 270 < th dose independent rect. 3 1
210 46.61 radiation 1.0 270 < th dose independent rect. 3 1
215 46.61 wind 7.0 270 < th dose independent rect. 21 3
216 46.61 temperature 10.0 270 > th dose independent rect. 4 23
217 46.61 radiation 1.0 270 < th dose dependent rect. 3 1
224 46.65 wind 7.0 270 < th dose independent rect. 20 5
227 46.70 precipitation 0.1 270 < th dose independent rect. 21 3
228 46.70 precipitation 0.1 270 < th dose dependent rect. 21 3
233 46.77 precipitation 0.1 270 < th dose independent rect. 20 5
234 46.77 precipitation 0.1 270 < th dose dependent rect. 20 5
245 46.82 temperature 10.0 270 > th dose independent rect. 21 3
246 46.82 temperature 30.0 270 < th dose independent rect. 21 3
247 46.82 humidity 50.0 270 > th dose independent rect. 21 3
250 46.82 atmosphere 995.0 270 > th dose independent rect. 21 3
251 46.82 radiation 1.0 270 < th dose independent rect. 21 3
257 46.82 temperature 10.0 270 > th dose independent rect. 24 21
258 46.82 radiation 1.0 270 < th dose dependent rect. 21 3
263 46.83 temperature 10.0 270 > th dose independent rect. 20 5
264 46.83 temperature 30.0 270 < th dose independent rect. 20 5
265 46.83 humidity 50.0 270 > th dose independent rect. 20 5
268 46.83 atmosphere 995.0 270 > th dose independent rect. 20 5
269 46.83 radiation 1.0 270 < th dose independent rect. 20 5
274 46.83 temperature 10.0 270 > th dose independent rect. 1 19
275 46.83 atmosphere 1015.0 270 < th dose independent rect. 1 19
276 46.83 radiation 1.0 270 < th dose dependent rect. 20 5
297 46.99 precipitation 0.1 270 < th dose independent rect. 3 1
298 46.99 precipitation 0.1 270 < th dose dependent rect. 3 1
304 47.04 atmosphere 995.0 270 > th dose independent rect. 24 21
307 47.06 wind 9.0 270 < th dose dependent rect. 3 1
327 47.12 humidity 60.0 10 > th dose dependent rect. 3 5
330 47.13 temperature 10.0 10 > th dose dependent rect. 3 4
354 47.23 wind 9.0 270 < th dose independent rect. 5 10
364 47.28 wind 9.0 270 < th dose independent rect. 1 19
373 47.33 wind 9.0 90 < th dose dependent rect. 7 20
390 47.36 temperature 10.0 90 > th dose independent rect. 3 18
391 47.36 atmosphere 1015.0 90 < th dose independent rect. 3 18
407 47.42 radiation 1.0 270 < th dose dependent sin 3 NA
409 47.44 wind 9.0 270 < th dose independent rect. 24 21
413 47.48 radiation 40.0 270 < th dose independent rect. 15 14
420 47.53 precipitation 0.1 270 < th dose independent rect. 5 10
421 47.53 precipitation 0.1 270 < th dose dependent rect. 5 10
461 47.59 temperature 10.0 270 > th dose independent rect. 5 10
462 47.59 atmosphere 1015.0 270 < th dose independent rect. 5 10
463 47.59 temperature 10.0 270 > th dose independent rect. 15 14
470 47.60 atmosphere 995.0 90 > th dose independent rect. 7 20
490 47.65 wind 9.0 10 < th dose independent rect. 7 20
496 47.66 wind 9.0 270 < th dose dependent rect. 21 3
504 47.69 radiation 20.0 10 < th dose independent rect. 3 5
512 47.73 wind 9.0 270 < th dose independent rect. 15 14
540 47.92 atmosphere 1015.0 90 < th dose dependent rect. 3 4
544 47.98 wind 7.0 10 < th dose independent rect. 3 4
547 47.98 atmosphere 995.0 90 > th dose independent rect. 3 18
552 48.01 temperature 10.0 10 > th dose independent rect. 3 4
556 48.01 temperature 30.0 10 < th dose independent rect. 3 4
558 48.01 humidity 50.0 10 > th dose independent rect. 3 4
564 48.01 atmosphere 995.0 10 > th dose independent rect. 3 4
566 48.01 atmosphere 1015.0 10 < th dose independent rect. 3 4
574 48.01 temperature 10.0 10 > th dose independent rect. 7 20
607 48.08 precipitation 0.1 270 < th dose independent rect. 1 19
608 48.08 precipitation 0.1 270 < th dose dependent rect. 1 19
614 48.14 humidity 80.0 90 > th dose dependent rect. 3 8
616 48.15 radiation 40.0 10 < th dose dependent rect. 3 5
639 48.24 wind 9.0 90 < th dose independent rect. 3 18
654 48.34 atmosphere 995.0 270 > th dose independent rect. 5 10
657 48.36 wind 1.0 270 > th dose independent rect. 10 10
661 48.40 wind 1.0 270 > th dose independent rect. 2 3
664 48.41 wind 9.0 90 < th dose dependent rect. 21 6
666 48.43 atmosphere 995.0 270 > th dose independent rect. 15 14
681 48.52 wind 1.0 270 > th dose independent rect. 20 5
687 48.53 precipitation 0.1 270 < th dose independent rect. 24 21
688 48.53 precipitation 0.1 270 < th dose dependent rect. 24 21
696 48.57 wind 7.0 270 < th dose independent rect. 20 14
743 48.81 wind 1.0 270 > th dose independent rect. 1 5
747 48.82 wind 1.0 270 > th dose independent rect. 21 3
784 48.90 humidity 50.0 270 > th dose independent rect. 6 19
796 48.91 temperature 10.0 270 > th dose independent rect. 10 10
797 48.91 atmosphere 1015.0 270 < th dose independent rect. 10 10
798 48.91 temperature 10.0 270 > th dose independent rect. 20 14
799 48.91 atmosphere 995.0 270 > th dose independent rect. 20 14
814 48.95 humidity 50.0 270 > th dose dependent rect. 21 3
832 49.04 precipitation 0.1 90 < th dose independent rect. 3 18
833 49.04 precipitation 0.1 90 < th dose dependent rect. 3 18
836 49.05 atmosphere 995.0 90 > th dose dependent rect. 3 4
848 49.06 precipitation 0.1 270 < th dose independent rect. 20 14
858 49.06 precipitation 0.1 270 < th dose dependent rect. 20 14
859 49.07 humidity 50.0 270 > th dose independent rect. 20 14
878 49.11 radiation 1.0 270 < th dose independent sin 3 NA
900 49.24 temperature 30.0 270 < th dose independent rect. 20 14
910 49.29 humidity 50.0 90 > th dose dependent rect. 21 6
921 49.36 wind 1.0 270 > th dose independent rect. 3 1