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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0548300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0209) R2 : 0.00364
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0569 (0.0441) R2dN8 : 0.00469 R2N8 : 0.00364
σ : 0.394
deviance : 71.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.81 0.384 3.48 -0.189 0.15 1.99 -0.391 -4 -0.0252 5.38 49 4530 -- --
68.22 0.385 3.4 0.0627 0.127 0.357 -0.407 -- 0.00884 5.05 54.77 4721 -- --
66.98 0.381 3.48 -0.202 0.139 2.31 -- -4.64 -0.0294 5.81 48.44 4686 -- --
67.9 0.384 3.41 -0.000439 0.152 0.405 -- -- -0.0138 5.25 52.2 5904 -- --
68.15 0.384 3.5 -0.217 -- 2.85 -- -6 -0.0242 -- 48.22 4660 -- --
69.73 0.391 3.42 0.0723 0.147 -- -0.403 -- -0.0537 5.51 -- -- -- --
70.09 0.392 3.42 0.0714 0.147 -- -- -- -0.0517 6.1 -- -- -- --
68.87 0.387 3.41 -0.0341 -- 0.398 -- -- -0.0172 -- 52.55 6056 -- --
67.78 0.383 3.41 -- 0.151 0.381 -- -- -0.0127 6.18 53.42 6078 -- --
71.21 0.394 3.42 0.0756 -- -- -- -- -0.0485 -- -- -- -- --
70.23 0.392 3.42 -- 0.148 -- -- -- -0.0597 6.08 -- -- -- --
68.9 0.387 3.41 -- -- 0.383 -- -- -0.0104 -- 53.41 6056 -- --
71.36 0.394 3.42 -- -- -- -- -- -0.0569 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.83 humidity 50.0 720 > th dose independent rect. 23 16
2 63.61 precipitation 0.1 720 < th dose independent rect. 15 8
3 63.61 precipitation 0.1 720 < th dose dependent rect. 15 8
4 63.94 precipitation 0.1 720 < th dose independent rect. 11 16
5 63.94 precipitation 0.1 720 < th dose dependent rect. 11 16
6 64.37 humidity 50.0 720 > th dose independent rect. 3 8
7 64.38 atmosphere 995.0 720 > th dose independent rect. 23 16
8 64.48 temperature 10.0 720 > th dose independent rect. 3 8
9 64.48 atmosphere 995.0 720 > th dose independent rect. 3 8
10 64.48 temperature 10.0 720 > th dose independent rect. 11 16
11 64.54 temperature 10.0 720 > th dose independent rect. 15 8
13 64.54 temperature 10.0 720 > th dose independent rect. 23 16
14 64.65 wind 9.0 720 < th dose independent rect. 3 8
15 64.83 atmosphere 995.0 720 > th dose independent rect. 11 16
16 64.86 atmosphere 1005.0 90 > th dose dependent rect. 2 1
17 64.88 atmosphere 1005.0 10 > th dose dependent rect. 2 2
18 64.95 atmosphere 995.0 720 > th dose independent rect. 15 8
20 65.13 atmosphere 1000.0 30 > th dose independent rect. 3 23
21 65.17 radiation 20.0 720 > th dose independent rect. 16 1
35 65.28 wind 9.0 720 < th dose independent rect. 15 8
37 65.29 wind 3.0 90 < th dose dependent rect. 2 1
39 65.33 radiation 1.0 43200 < th dose dependent rect. 3 1
40 65.44 humidity 50.0 4320 > th dose independent rect. 14 1
45 65.53 wind 3.0 90 < th dose independent rect. 2 1
46 65.53 atmosphere 1005.0 90 > th dose independent rect. 2 1
48 65.64 humidity 50.0 30 > th dose independent rect. 3 23
52 65.73 temperature 25.0 90 > th dose independent rect. 1 1
53 65.74 temperature 25.0 90 > th dose dependent rect. 2 1
55 65.80 radiation 1.0 4320 < th dose dependent rect. 3 1
66 65.89 wind 9.0 1440 < th dose independent rect. 3 1
67 65.89 temperature 10.0 1440 > th dose independent rect. 3 1
70 65.89 temperature 30.0 1440 < th dose independent rect. 3 1
74 65.89 humidity 50.0 1440 > th dose independent rect. 3 1
83 65.89 atmosphere 995.0 1440 > th dose independent rect. 3 1
84 65.89 radiation 1.0 1440 < th dose independent rect. 3 1
104 65.89 temperature 10.0 1440 > th dose independent rect. 4 23
120 65.91 atmosphere 1015.0 720 < th dose independent rect. 3 8
122 65.92 precipitation 0.1 720 < th dose independent rect. 3 8
123 65.92 radiation 30.0 43200 < th dose dependent rect. 23 1
124 65.92 precipitation 0.1 720 < th dose dependent rect. 3 8
145 65.93 radiation 10.0 720 > th dose dependent rect. 15 16
158 65.96 temperature 10.0 30 > th dose independent rect. 2 1
160 65.96 temperature 30.0 30 < th dose independent rect. 2 1
161 65.96 humidity 50.0 30 > th dose independent rect. 2 1
164 65.96 atmosphere 995.0 30 > th dose independent rect. 2 1
165 65.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
167 65.96 radiation 1.0 30 < th dose independent rect. 2 1
172 65.96 precipitation 0.1 30 < th dose independent rect. 2 1
173 65.96 temperature 10.0 30 > th dose independent rect. 3 23
174 65.96 precipitation 0.1 30 < th dose independent rect. 3 23
175 65.96 wind 1.0 14400 < th dose dependent rect. 6 1
176 65.96 humidity 50.0 30 > th dose dependent rect. 2 1
178 65.96 radiation 1.0 30 < th dose dependent rect. 2 1
183 65.96 precipitation 0.1 30 < th dose dependent rect. 2 1
184 65.96 precipitation 0.1 30 < th dose dependent rect. 3 23
186 65.97 humidity 90.0 30 > th dose independent rect. 2 1
194 65.99 atmosphere 1015.0 30 < th dose dependent rect. 2 1
197 66.02 radiation 10.0 720 > th dose dependent rect. 16 1
201 66.04 temperature 30.0 30 < th dose dependent rect. 2 1
202 66.05 wind 1.0 30 > th dose independent rect. 2 1
211 66.11 radiation 10.0 4320 < th dose dependent rect. 23 1
213 66.12 temperature 25.0 10 > th dose independent rect. 22 2
255 66.18 precipitation 0.1 720 < th dose independent rect. 23 16
258 66.18 precipitation 0.1 720 < th dose dependent rect. 23 16
289 66.22 radiation 10.0 720 < th dose independent rect. 16 9
304 66.23 wind 1.0 14400 < th dose independent rect. 6 1
306 66.23 wind 1.0 14400 < th dose dependent rect. 4 3
308 66.24 humidity 50.0 4320 < th dose independent rect. 14 1
310 66.24 radiation 10.0 30 < th dose dependent rect. 3 23
325 66.32 radiation 10.0 30 < th dose independent rect. 3 23
327 66.34 wind 1.0 14400 > th dose independent rect. 5 2
331 66.35 wind 9.0 1440 < th dose independent rect. 23 1
332 66.35 temperature 10.0 1440 > th dose independent rect. 23 1
335 66.35 temperature 30.0 1440 < th dose independent rect. 23 1
339 66.35 humidity 50.0 1440 > th dose independent rect. 23 1
349 66.35 atmosphere 995.0 1440 > th dose independent rect. 23 1
350 66.35 radiation 1.0 1440 < th dose independent rect. 23 1
370 66.35 wind 9.0 30 < th dose independent rect. 3 23
371 66.35 temperature 10.0 1440 > th dose independent rect. 24 23
380 66.36 wind 3.0 30 < th dose independent rect. 22 1
381 66.36 humidity 70.0 14400 < th dose independent rect. 8 1
383 66.39 temperature 20.0 30 > th dose dependent rect. 22 1
399 66.41 humidity 80.0 30 > th dose independent rect. 22 1
402 66.42 humidity 70.0 14400 > th dose independent rect. 8 1
407 66.42 atmosphere 1005.0 30 > th dose dependent rect. 22 1
410 66.43 humidity 50.0 4320 < th dose dependent rect. 14 1
412 66.43 humidity 50.0 30 > th dose dependent rect. 3 23
420 66.44 humidity 90.0 30 < th dose independent rect. 22 1
432 66.44 atmosphere 1000.0 30 > th dose independent rect. 23 23
442 66.45 wind 5.0 30 < th dose dependent rect. 22 1
447 66.47 radiation 40.0 720 < th dose independent rect. 14 1
450 66.48 atmosphere 1005.0 30 > th dose independent rect. 22 1
451 66.48 atmosphere 1015.0 43200 < th dose independent rect. 19 1
456 66.49 wind 1.0 30 > th dose independent rect. 22 1
462 66.50 humidity 80.0 14400 < th dose dependent rect. 8 1
466 66.51 temperature 10.0 30 > th dose independent rect. 22 1
468 66.51 temperature 30.0 30 < th dose independent rect. 22 1
469 66.51 humidity 50.0 30 > th dose independent rect. 22 1
472 66.51 atmosphere 995.0 30 > th dose independent rect. 22 1
474 66.51 atmosphere 1010.0 30 < th dose independent rect. 22 1
476 66.51 radiation 1.0 30 < th dose independent rect. 22 1
481 66.51 precipitation 0.1 30 < th dose independent rect. 22 1
484 66.51 humidity 70.0 14400 > th dose independent rect. 4 5
493 66.51 temperature 10.0 30 > th dose independent rect. 23 23
494 66.51 humidity 50.0 30 > th dose dependent rect. 22 1
497 66.51 radiation 1.0 30 < th dose dependent rect. 22 1
502 66.51 precipitation 0.1 30 < th dose dependent rect. 22 1
511 66.51 radiation 20.0 720 < th dose dependent rect. 16 9
532 66.53 humidity 70.0 14400 > th dose independent rect. 20 13
534 66.53 humidity 60.0 14400 < th dose dependent rect. 12 1
536 66.54 humidity 50.0 720 > th dose independent rect. 7 8
539 66.56 wind 1.0 720 > th dose independent rect. 15 8
567 66.60 atmosphere 1015.0 30 < th dose dependent rect. 22 1
568 66.60 wind 1.0 14400 < th dose dependent rect. 2 6
575 66.64 humidity 90.0 30 < th dose dependent rect. 22 1
584 66.68 wind 9.0 720 < th dose independent rect. 11 16
590 66.69 atmosphere 1015.0 43200 > th dose dependent rect. 12 5
594 66.70 atmosphere 1015.0 43200 > th dose dependent rect. 11 9
599 66.71 atmosphere 1015.0 14400 > th dose dependent rect. 14 8
602 66.72 wind 7.0 720 < th dose independent rect. 17 12
603 66.72 atmosphere 1015.0 14400 > th dose dependent rect. 20 1
608 66.73 wind 1.0 30 > th dose dependent rect. 22 1
614 66.75 precipitation 0.1 1440 < th dose independent rect. 23 1
615 66.75 humidity 60.0 14400 < th dose independent rect. 10 2
616 66.75 precipitation 0.1 1440 < th dose dependent rect. 23 1
618 66.75 atmosphere 1015.0 43200 > th dose dependent rect. 13 2
650 66.78 precipitation 0.1 30 < th dose independent rect. 23 23
655 66.78 precipitation 0.1 30 < th dose dependent rect. 23 23
657 66.79 temperature 30.0 30 < th dose dependent rect. 22 1
661 66.79 humidity 60.0 14400 < th dose dependent rect. 8 7
674 66.79 humidity 60.0 14400 < th dose dependent rect. 19 19
729 66.83 humidity 60.0 14400 < th dose dependent sin 5 NA
741 66.85 atmosphere 1015.0 43200 < th dose independent rect. 14 6
742 66.85 humidity 50.0 30 > th dose independent rect. 23 23
750 66.86 wind 1.0 14400 < th dose independent rect. 2 6
751 66.86 humidity 50.0 14400 > th dose independent rect. 14 22
781 66.88 atmosphere 1015.0 14400 > th dose independent rect. 14 3
785 66.88 humidity 60.0 4320 < th dose dependent rect. 18 2
804 66.89 humidity 50.0 14400 > th dose independent rect. 13 17
823 66.90 wind 1.0 14400 > th dose independent rect. 2 6
824 66.90 humidity 50.0 14400 > th dose independent rect. 13 6
825 66.90 atmosphere 1015.0 43200 > th dose independent rect. 15 6
828 66.90 atmosphere 1015.0 43200 > th dose independent rect. 13 7
838 66.90 humidity 60.0 14400 < th dose independent rect. 19 17
867 66.91 humidity 90.0 90 < th dose independent rect. 2 1
904 66.93 radiation 20.0 720 < th dose independent rect. 15 15
927 66.95 wind 1.0 14400 > th dose independent rect. 21 10
932 66.96 atmosphere 1015.0 43200 > th dose independent rect. 19 1
944 66.97 atmosphere 1000.0 720 > th dose independent rect. 14 1
948 66.97 wind 7.0 720 < th dose independent rect. 16 14
958 66.98 humidity 50.0 14400 > th dose independent sin 17 NA
986 66.99 humidity 60.0 14400 < th dose dependent no NA NA