BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0188300 Os10g0188300|AK070718
(320 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0188300 DNA polymerase, beta-like region domain contai... 667 0.0
Os02g0122100 DNA polymerase, beta-like region domain contai... 417 e-117
Os08g0559900 PAP/25A core domain containing protein 88 8e-18
Os01g0846500 PAP/25A core domain containing protein 87 1e-17
Os01g0672700 DNA polymerase, beta-like region domain contai... 84 1e-16
Os09g0570600 PAP/25A core domain containing protein 75 8e-14
>Os10g0188300 DNA polymerase, beta-like region domain containing protein
Length = 320
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MSIFESLVPSDEEISKQKQLLATLSRLINKEWPNSKLYLYGSCANSFGFSNSDIDLCLSI 60
MSIFESLVPSDEEISKQKQLLATLSRLINKEWPNSKLYLYGSCANSFGFSNSDIDLCLSI
Sbjct: 1 MSIFESLVPSDEEISKQKQLLATLSRLINKEWPNSKLYLYGSCANSFGFSNSDIDLCLSI 60
Query: 61 DEKEMSKVDIILKLAHILHAGNLRNIQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVN 120
DEKEMSKVDIILKLAHILHAGNLRNIQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVN
Sbjct: 61 DEKEMSKVDIILKLAHILHAGNLRNIQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVN 120
Query: 121 TKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCL 180
TKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCL
Sbjct: 121 TKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCL 180
Query: 181 QEMEPTYYVTVDNNICAYFDQVDKLNGFGAQCKDTLSRLLWGFFRYWAYAHNYTKDVISI 240
QEMEPTYYVTVDNNICAYFDQVDKLNGFGAQCKDTLSRLLWGFFRYWAYAHNYTKDVISI
Sbjct: 181 QEMEPTYYVTVDNNICAYFDQVDKLNGFGAQCKDTLSRLLWGFFRYWAYAHNYTKDVISI 240
Query: 241 RTGRTISKNMKDWTRRIGNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEILH 300
RTGRTISKNMKDWTRRIGNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEILH
Sbjct: 241 RTGRTISKNMKDWTRRIGNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEILH 300
Query: 301 LDPNPSITLFEPYVPSEAET 320
LDPNPSITLFEPYVPSEAET
Sbjct: 301 LDPNPSITLFEPYVPSEAET 320
>Os02g0122100 DNA polymerase, beta-like region domain containing protein
Length = 597
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/316 (63%), Positives = 252/316 (79%), Gaps = 3/316 (0%)
Query: 1 MSIFESLVPSDEEISKQKQLLATLSRLINKEWPNSKLYLYGSCANSFGFSNSDIDLCLSI 60
+S++ESL PS+E +KQ+QL+ +L+ ++KEWPN++L+LYGSCANSFG S+SD+D+CL I
Sbjct: 278 LSLYESLNPSEEHKAKQRQLIESLTNSVSKEWPNAQLHLYGSCANSFGNSHSDVDVCLQI 337
Query: 61 D-EKEMSKVDIILKLAHILHAGNLRNIQALTRARVPIVKLMDPNTGLSCDICVNNLLAVV 119
D E + +++L LA L + N++A+T ARVPIVK+ DP +GLSCDICVNNL AV
Sbjct: 338 DTAAEENIAELLLALAETLRKDDFDNVEAITSARVPIVKIADPGSGLSCDICVNNLFAVA 397
Query: 120 NTKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQ--RIL 177
NTKLL+DY++ID+RL LAFIVKHWAK R VNETY+GTLSSYAYV+MCI +LQ + +IL
Sbjct: 398 NTKLLKDYAQIDERLLQLAFIVKHWAKLRGVNETYRGTLSSYAYVLMCISFLQQREPKIL 457
Query: 178 PCLQEMEPTYYVTVDNNICAYFDQVDKLNGFGAQCKDTLSRLLWGFFRYWAYAHNYTKDV 237
PCLQ MEPTY V VD CAYFDQVD+L FGA+ K++++ LLW FF YWA+ H+Y DV
Sbjct: 458 PCLQAMEPTYTVVVDGTECAYFDQVDQLKDFGAENKESIAELLWAFFHYWAFHHDYRNDV 517
Query: 238 ISIRTGRTISKNMKDWTRRIGNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAE 297
IS+R G TISK K+WT R+GNDRHLICIEDPFETSHDLGRVVD ++I LREEFERAA
Sbjct: 518 ISVRMGNTISKQEKNWTTRVGNDRHLICIEDPFETSHDLGRVVDRQTIRVLREEFERAAT 577
Query: 298 ILHLDPNPSITLFEPY 313
IL D +P + LFEPY
Sbjct: 578 ILQYDDDPCVALFEPY 593
>Os08g0559900 PAP/25A core domain containing protein
Length = 581
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 46/275 (16%)
Query: 40 YGSCANSFGFSNSDIDLCLSIDEKEMS------KVDIILKLAHILHA----GNLRNIQAL 89
+GS S SD+DL ++ + S K+ +I LA +L+A G + +
Sbjct: 110 FGSFTMDLFTSKSDLDLSVNFNADFHSQFARKDKISVIRNLAKVLYAHQRNGRCHGVLPV 169
Query: 90 TRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPLAFIVKHWAKSRC 149
A+VP++K++D TG+ CDI V N + + + + S ID+R + L +++K WAK+
Sbjct: 170 VTAKVPVLKVIDKGTGVECDISVENKDGMSRSMIFKLISSIDERFQILCYLMKFWAKAHD 229
Query: 150 VNETYQGTLSSYAYVIMCIHYLQSQR--ILPCLQEM--EPTYYVTVDNNICAYFDQVDKL 205
VN T+SS A + + +LQ++R ILP + + + ++ N+ +
Sbjct: 230 VNCPRDRTMSSMAIISLVAFHLQTRRPPILPAFSALLKDGPDFPSIQRNVSL-------V 282
Query: 206 NGFGAQCKDTLSRL----------LWGFFRYWAYAHNYTKDVISIRTGRTISKNMKDWTR 255
GFG++ K++++ L + G + A N+ I K W R
Sbjct: 283 EGFGSRNKESVAELFVSLMSKLLSVEGLWEQGLCASNFEGSWI-----------FKTWER 331
Query: 256 RIGNDRHLICIEDPFETSHDLGRVVDNRSIWALRE 290
+GN + +ED + S + R V + + E
Sbjct: 332 GVGN----LSVEDFLDRSQNFARAVGKEEMQKISE 362
>Os01g0846500 PAP/25A core domain containing protein
Length = 381
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 131/280 (46%), Gaps = 29/280 (10%)
Query: 40 YGSCANSFGFSNSDIDL------CLSIDEKEMSKVDIILKLAHILHA-GNLRNIQALTRA 92
+GS + + D+D+ L++ + K D + ++ L G R+++ + A
Sbjct: 58 FGSFVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNA 117
Query: 93 RVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNE 152
RVP+++ + G+SCDI ++N + +K+ + +D R + +VK WAK++ +N+
Sbjct: 118 RVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNIND 177
Query: 153 TYQGTLSSYAYVIMCIHYLQS--QRILPCLQEMEPTYYVTVDNNICA-------YFDQVD 203
GTL+SY+ ++ + + Q+ ILP L+E+ Y + +I + D+V
Sbjct: 178 PKNGTLNSYSLCLLVLFHFQTCEPAILPPLKEI---YEGNIMEDISGRAYYNEKHLDEVC 234
Query: 204 KLN-------GFGAQCKDTLSRLLWGFFRYWAYAHNYTKDVISIRTGRTISKNMKDWTRR 256
+N G + + +LS LL FF + + VIS TGR + ++D R
Sbjct: 235 SINIERFRRQNMGQRNQSSLSHLLASFFHKFFRIDALSDKVISTYTGRL--ERIQDNPRW 292
Query: 257 IGNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAA 296
+ L +EDPFE + R V + + F A+
Sbjct: 293 MDKSYSLF-VEDPFEKPDNAARAVGSFEFQDIVNAFSNAS 331
>Os01g0672700 DNA polymerase, beta-like region domain containing protein
Length = 578
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 130/312 (41%), Gaps = 44/312 (14%)
Query: 7 LVPSDEEISKQKQLLATLSRLINKEWPNSKLYLYGSCANSFGFSNSDIDLCLSIDEKEMS 66
+ PS EE S + + +S +I WP K+ ++GS SDID+ + +
Sbjct: 153 ISPSAEEQSSRTAAVKAVSNVIKHIWPQCKVEVFGSFRTGLFLPTSDIDVVIFDSRVKTP 212
Query: 67 KVDIILKLAHILHAGNLRNIQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRD 126
+V + + G + IQ + +ARVPIVK ++ + ++ DI + ++D
Sbjct: 213 QVGLYALAKALSQKGVAKKIQVIAKARVPIVKFVERKSEIAFDISFDMDGGPQAADFIKD 272
Query: 127 YSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCLQEMEPT 186
Y + LR L I+K + R +NE Y G + SYA + M I +LQ
Sbjct: 273 YVKKFPALRHLCMILKVFLHQRELNEVYTGGIGSYALLTMLITHLQ-------------- 318
Query: 187 YYVTVDNNICAYFDQVDKLNGFGAQCKDTLSRLLWGFFRYWAYAHNYTKDVISIRTGRTI 246
+ +I Y + + L LL F ++ N IS + RT
Sbjct: 319 -LIWGGKDILGY-----------RKKEHNLGILLIALFDFYGRKLNNWDVGISCNSARTF 366
Query: 247 ----SKNMKDWTRRIGNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEIL--- 299
KN + R +L+ I+DP +D+G+ ++ + + ++ F +A +L
Sbjct: 367 FLKTDKNFANPDR-----AYLLAIQDPMVPDNDIGK--NSFNYFKVKSAFSKAYSVLTDA 419
Query: 300 ----HLDPNPSI 307
L PN SI
Sbjct: 420 NLITSLGPNRSI 431
>Os09g0570600 PAP/25A core domain containing protein
Length = 310
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 11/149 (7%)
Query: 76 HILHAGNLRNIQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLR 135
I G + + ARVPIV ++D TG+ CDI V N + + + + S +D R +
Sbjct: 102 QIFGNGIFCGVLPVVTARVPIVNVIDRGTGIECDITVENKDGMTRSMIFKFISSLDPRFQ 161
Query: 136 PLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQR--ILPCLQEM--EPTYYVTV 191
L+++VK WAK VN + TLSS + V + +LQ++ ILP L + + + + +V
Sbjct: 162 ILSYLVKFWAKIHDVNSPRERTLSSMSIVSLVAFHLQTRDPPILPPLSALLKDGSDFESV 221
Query: 192 DNNICAYFDQVDKLNGFGAQCKDTLSRLL 220
+ N A+ GFG K+T++ L
Sbjct: 222 ERNTLAF-------KGFGRTNKETVAELF 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,368,457
Number of extensions: 409141
Number of successful extensions: 767
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 6
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)